Variant report

Variant	rs555457746
Chromosome Location	chr14:67820196-67820197
allele	-/TTG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:67819768-67820233	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ATP6V1D	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv832821	chr14:67590418-67828169	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1054389	chr14:67804987-67922598	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv542121	chr14:67804987-67922598	Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	esv3362997	chr14:67819304-67822453	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67762600-67825200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:67764400-67825200	Weak transcription	Stomach Mucosa	stomach
3	chr14:67767200-67825200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:67768600-67825800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:67797000-67820800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:67798400-67820200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:67800000-67825200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:67800400-67820200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:67805200-67823600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:67808400-67820400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:67808400-67823400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr14:67808600-67820200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr14:67808600-67820400	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr14:67808800-67820200	Strong transcription	Adipose Nuclei	Adipose
15	chr14:67809000-67820200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:67809000-67820200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:67809000-67820200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:67809000-67820200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:67809000-67820200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr14:67809000-67820200	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:67809000-67820200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:67809000-67820200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:67809000-67820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:67809000-67820200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr14:67809000-67820200	Strong transcription	Placenta	Placenta
26	chr14:67809000-67820200	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr14:67809000-67820400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr14:67809000-67820800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr14:67809200-67820600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:67809200-67820800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:67809600-67820200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:67809600-67820200	Strong transcription	Osteobl	bone
33	chr14:67809800-67820400	Strong transcription	Left Ventricle	heart
34	chr14:67810000-67820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr14:67810000-67820200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr14:67810000-67820800	Strong transcription	Fetal Muscle Leg	muscle
37	chr14:67810000-67820800	Strong transcription	HSMMtube	muscle
38	chr14:67810400-67820200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr14:67811000-67823200	Weak transcription	K562	blood
40	chr14:67811000-67823400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr14:67811200-67823200	Weak transcription	Fetal Heart	heart
42	chr14:67811400-67824000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:67811400-67824400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr14:67811600-67820600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:67811600-67824400	Weak transcription	Small Intestine	intestine
46	chr14:67811800-67825200	Weak transcription	Gastric	stomach
47	chr14:67812000-67823200	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr14:67814600-67824400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr14:67815000-67820600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:67815000-67825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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