Variant report

Variant	rs555470069
Chromosome Location	chr12:10820322-10820323
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv607	chr12:10776867-10821535	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1050613	chr12:10809805-10844399	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv527604	chr12:10820318-10820776	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10810600-10821200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:10815000-10820400	Weak transcription	Stomach Mucosa	stomach
3	chr12:10818000-10820400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:10818600-10821600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:10818800-10820800	Weak transcription	NHEK	skin
6	chr12:10819000-10825400	Weak transcription	HMEC	breast
7	chr12:10819200-10820400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:10819800-10821600	Enhancers	HUVEC	blood vessel
9	chr12:10820000-10821000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:10820000-10821200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr12:10820200-10821200	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr12:10820200-10821400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr12:10820200-10822000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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