Variant report

Variant	rs555472198
Chromosome Location	chr9:115914776-115914777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115875175..115875677-chr9:115914252..115914851,2	MCF-7	breast:
2	chr9:115913631..115915237-chr9:115923889..115925758,2	K562	blood:
3	chr9:115905644..115908349-chr9:115914691..115916468,2	K562	blood:
4	chr9:115913327..115916086-chr9:115970304..115972231,2	MCF-7	breast:
5	chr9:115913338..115915206-chr9:115920921..115923373,3	K562	blood:
6	chr9:115881515..115883241-chr9:115913395..115914943,2	MCF-7	breast:
7	chr9:115887611..115890231-chr9:115913519..115916345,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231528	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831691	chr9:115754699-115929459	Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv893743	chr9:115867276-115917783	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1051654	chr9:115881588-115935663	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv1035406	chr9:115883978-116003980	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	nsv540201	chr9:115883978-116003980	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	nsv615212	chr9:115891009-115915859	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv466507	chr9:115905850-115936903	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv615213	chr9:115905850-115936903	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv8563	chr9:115914276-115917151	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115912600-115915000	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr9:115912800-115914800	Active TSS	Right Atrium	heart
3	chr9:115913000-115915000	Active TSS	Brain Cingulate Gyrus	brain
4	chr9:115913000-115915800	Active TSS	Brain Angular Gyrus	brain
5	chr9:115913000-115916600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:115913400-115915000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:115913600-115915000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:115913800-115914800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:115913800-115915000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:115913800-115915000	Flanking Active TSS	Liver	Liver
11	chr9:115913800-115915000	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr9:115913800-115915000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr9:115913800-115915400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr9:115913800-115915400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr9:115913800-115915400	Flanking Active TSS	Adipose Nuclei	Adipose
16	chr9:115913800-115915800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr9:115913800-115918000	Weak transcription	Aorta	Aorta
18	chr9:115914000-115914800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:115914000-115914800	Flanking Active TSS	Colonic Mucosa	Colon
20	chr9:115914000-115914800	Flanking Active TSS	Placenta	Placenta
21	chr9:115914000-115914800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr9:115914000-115914800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr9:115914000-115914800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr9:115914000-115914800	Weak transcription	NH-A	brain
25	chr9:115914000-115915000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:115914000-115915000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr9:115914000-115915000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr9:115914000-115915000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr9:115914000-115915000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:115914000-115915000	Enhancers	Fetal Brain Female	brain
31	chr9:115914000-115915000	Enhancers	Spleen	Spleen
32	chr9:115914000-115915000	Flanking Active TSS	NHDF-Ad	bronchial
33	chr9:115914000-115915000	Flanking Active TSS	NHEK	skin
34	chr9:115914000-115915200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:115914000-115915200	Enhancers	Stomach Mucosa	stomach
36	chr9:115914000-115915400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:115914000-115915400	Enhancers	Small Intestine	intestine
38	chr9:115914000-115915600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr9:115914000-115923600	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr9:115914000-115925000	Weak transcription	Fetal Kidney	kidney
41	chr9:115914200-115914800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:115914200-115914800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:115914200-115914800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:115914200-115914800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr9:115914200-115914800	Enhancers	Fetal Brain Male	brain
46	chr9:115914200-115914800	Enhancers	K562	blood
47	chr9:115914200-115915000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:115914200-115915000	Enhancers	Fetal Thymus	thymus
49	chr9:115914200-115915000	Enhancers	Lung	lung
50	chr9:115914200-115915000	Active TSS	Rectal Smooth Muscle	rectum

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