Variant report

Variant	rs555506416
Chromosome Location	chr12:117563948-117563949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv899542	chr12:117549739-117623136	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a
3	esv3415031	chr12:117562369-117568367	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv3428816	chr12:117562469-117568067	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	esv3390043	chr12:117562869-117568067	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117551600-117566000	Weak transcription	Spleen	Spleen
2	chr12:117557400-117565800	Weak transcription	Gastric	stomach
3	chr12:117557600-117564000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:117559000-117564800	Weak transcription	Right Ventricle	heart
5	chr12:117559800-117582200	Weak transcription	Brain Angular Gyrus	brain
6	chr12:117560000-117581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:117563000-117564000	Enhancers	Esophagus	oesophagus
8	chr12:117563000-117564200	Enhancers	Fetal Brain Male	brain
9	chr12:117563200-117567800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:117563600-117564000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr12:117563600-117564200	Enhancers	A549	lung
12	chr12:117563600-117564400	ZNF genes & repeats	Fetal Kidney	kidney
13	chr12:117563600-117564600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr12:117563600-117564600	Active TSS	Fetal Lung	lung
15	chr12:117563600-117568200	Weak transcription	Placenta	Placenta
16	chr12:117563800-117564000	Enhancers	Fetal Heart	heart
17	chr12:117563800-117564000	Enhancers	Hela-S3	cervix
18	chr12:117563800-117564200	Enhancers	Pancreas	Pancrea
19	chr12:117563800-117564600	Strong transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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