Variant report

Variant	rs555521608
Chromosome Location	chr14:55530064-55530065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:54907732..54909904-chr14:55529224..55531676,2	K562	blood:

Variant related genes	Relation type
ENSG00000100528	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv977468	chr14:55529336-55531777	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55519600-55534400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:55519600-55538000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:55520200-55538400	Weak transcription	Fetal Kidney	kidney
4	chr14:55520400-55538200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:55520600-55533600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:55520600-55535000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:55520600-55538000	Weak transcription	Psoas Muscle	Psoas
8	chr14:55520600-55538600	Weak transcription	Fetal Brain Male	brain
9	chr14:55520800-55534800	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:55520800-55535200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr14:55521600-55535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:55521600-55535400	Strong transcription	NHEK	skin
13	chr14:55522000-55535600	Strong transcription	Fetal Thymus	thymus
14	chr14:55522600-55532200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:55522600-55536600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr14:55523200-55533200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:55523600-55533600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:55523600-55535200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr14:55524200-55535400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr14:55524400-55533400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:55524400-55536600	Strong transcription	Osteobl	bone
22	chr14:55524600-55533600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr14:55524600-55533600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:55524600-55534800	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr14:55524800-55531800	Strong transcription	HMEC	breast
26	chr14:55524800-55535600	Strong transcription	A549	lung
27	chr14:55524800-55535800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:55526000-55534800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:55526200-55536000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr14:55526400-55538000	Weak transcription	Small Intestine	intestine
31	chr14:55526600-55531000	Strong transcription	Fetal Intestine Small	intestine
32	chr14:55526600-55535800	Strong transcription	Dnd41	blood
33	chr14:55526600-55537600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:55526600-55538400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:55527200-55532800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:55527200-55533600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:55527400-55530400	Strong transcription	Fetal Stomach	stomach
38	chr14:55527400-55530800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr14:55527400-55531000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:55527400-55531000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:55527400-55532600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr14:55527400-55533400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr14:55527400-55535200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr14:55527600-55531400	Strong transcription	Fetal Intestine Large	intestine
45	chr14:55527600-55533600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr14:55527600-55534800	Strong transcription	HUVEC	blood vessel
47	chr14:55527800-55533600	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:55528000-55532000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:55528000-55532600	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr14:55528000-55534600	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links