Variant report

Variant	rs555537101
Chromosome Location	chr16:47652472-47652473
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47652198..47653880-chr16:47657938..47660462,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv978304	chr16:47652093-47656051	Weak transcription Enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47609600-47694400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr16:47620400-47653000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr16:47625200-47668400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr16:47626200-47676600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr16:47626200-47677600	Weak transcription	Aorta	Aorta
6	chr16:47626400-47657200	Weak transcription	Hela-S3	cervix
7	chr16:47626400-47659800	Weak transcription	Fetal Lung	lung
8	chr16:47626400-47670400	Weak transcription	Fetal Intestine Small	intestine
9	chr16:47626600-47660800	Weak transcription	Stomach Mucosa	stomach
10	chr16:47626600-47670200	Weak transcription	Spleen	Spleen
11	chr16:47626600-47671000	Weak transcription	Esophagus	oesophagus
12	chr16:47626600-47724600	Weak transcription	Small Intestine	intestine
13	chr16:47627000-47685000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr16:47633000-47676200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr16:47635000-47664800	Weak transcription	Pancreas	Pancrea
16	chr16:47635200-47684200	Weak transcription	Ovary	ovary
17	chr16:47635600-47670400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:47645000-47677800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr16:47645400-47658000	Weak transcription	HSMM	muscle
20	chr16:47645400-47670800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr16:47645400-47676600	Weak transcription	Fetal Thymus	thymus
22	chr16:47645600-47656200	Weak transcription	GM12878-XiMat	blood
23	chr16:47645600-47667400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr16:47645600-47668400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr16:47646000-47667800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr16:47646200-47653400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr16:47646200-47677200	Weak transcription	HSMMtube	muscle
28	chr16:47646600-47671000	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr16:47646800-47667400	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr16:47647000-47668200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr16:47647000-47669400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:47647200-47653200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr16:47647200-47658400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr16:47647200-47667200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr16:47647200-47667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr16:47647200-47668400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:47647200-47668600	Weak transcription	Adipose Nuclei	Adipose
38	chr16:47647200-47675800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr16:47647400-47652800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr16:47647400-47668400	Weak transcription	Duodenum Mucosa	Duodenum
41	chr16:47647400-47669000	Weak transcription	Dnd41	blood
42	chr16:47647400-47670800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:47647400-47676600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr16:47647600-47668600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:47647600-47670200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:47647600-47684200	Weak transcription	Fetal Muscle Leg	muscle
47	chr16:47647800-47668400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr16:47648200-47660000	Weak transcription	Fetal Stomach	stomach
49	chr16:47648200-47667400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr16:47648200-47668600	Weak transcription	Thymus	Thymus

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