Variant report

Variant	rs555556838
Chromosome Location	chr2:173186077-173186078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3496929	chr2:173179182-173186272	ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3496927	chr2:173179301-173186587	Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv436280	chr2:173179578-173186283	Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv511825	chr2:173179637-173186244	Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3458700	chr2:173179874-173186281	Active TSS Weak transcription ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3496931	chr2:173179912-173186416	ZNF genes & repeats Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3496926	chr2:173179926-173186159	Weak transcription Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3458698	chr2:173179929-173186156	Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3496932	chr2:173179937-173186159	Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3496928	chr2:173179937-173186324	Active TSS ZNF genes & repeats Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv3458699	chr2:173179966-173186109	Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv498946	chr2:173179979-173186122	Active TSS Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3458701	chr2:173179980-173186122	Weak transcription Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173185800-173186200	Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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