Variant report

Variant	rs555574
Chromosome Location	chr6:71594210-71594211
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71256654..71257504-chr6:71593787..71594712,5	MCF-7	breast:
2	chr6:71593768..71598553-chr6:71600213..71604181,5	K562	blood:
3	chr6:71594143..71594787-chr6:71662346..71663077,2	K562	blood:
4	chr6:70931382..70931981-chr6:71593939..71594756,2	MCF-7	breast:
5	chr6:71422116..71424990-chr6:71593570..71595657,2	MCF-7	breast:
6	chr6:71415951..71417425-chr6:71593807..71595048,6	MCF-7	breast:
7	chr6:71230209..71230795-chr6:71593852..71594838,2	MCF-7	breast:
8	chr6:71594169..71594842-chr6:71665262..71666233,2	MCF-7	breast:
9	chr6:71556618..71557509-chr6:71593792..71594755,2	K562	blood:
10	chr6:71416020..71416980-chr6:71593572..71595009,9	K562	blood:
11	chr6:71081350..71081923-chr6:71593775..71594667,2	K562	blood:
12	chr6:71552964..71553967-chr6:71593795..71595014,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10945264	0.81[YRI][hapmap]
rs13212642	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs66514665	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv525542	chr6:71589509-71599887	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv823726	chr6:71593908-71594758	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71584400-71595800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:71593600-71596400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:71593800-71594800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:71593800-71595800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:71593800-71596200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:71594000-71594400	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:71594000-71594400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:71594000-71595200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:71594000-71596400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:71594200-71594600	Enhancers	HepG2	liver
11	chr6:71594200-71596000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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