Variant report

Variant	rs555574465
Chromosome Location	chr13:97991228-97991229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97887496..97890340-chr13:97991017..97992548,2	K562	blood:
2	chr13:97985220..97987596-chr13:97990645..97993198,3	K562	blood:
3	chr13:97990074..97993792-chr13:97995202..97997609,3	K562	blood:
4	chr13:97907616..97910279-chr13:97990865..97992598,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3398856	chr13:97990623-97992426	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
2	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:97971600-97991400	Weak transcription	Stomach Mucosa	stomach
4	chr13:97971800-97991800	Weak transcription	Small Intestine	intestine
5	chr13:97980800-97991800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:97981000-97991400	Weak transcription	HMEC	breast
7	chr13:97981000-97998800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:97981200-97991400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:97982000-97991400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr13:97982000-98002200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:97984000-98000800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:97984400-97992400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr13:97985000-97991400	Weak transcription	GM12878-XiMat	blood
16	chr13:97985600-97992800	Strong transcription	HepG2	liver
17	chr13:97985800-97992000	Strong transcription	Primary B cells from cord blood	blood
18	chr13:97986200-97991600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr13:97986200-98003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr13:97986400-97991400	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr13:97986400-97992000	Strong transcription	Primary T cells from cord blood	blood
22	chr13:97986400-97992400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:97986600-97991400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr13:97986600-97991600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr13:97986600-97998400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr13:97986800-97991400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:97987200-97991400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr13:97987200-97991400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr13:97987400-97991400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:97987600-97991600	Strong transcription	Fetal Intestine Small	intestine
31	chr13:97987800-97991400	Weak transcription	A549	lung
32	chr13:97988000-97991400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr13:97988000-97991400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr13:97988000-97992200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:97988200-97991400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr13:97988200-97991400	Strong transcription	Osteobl	bone
37	chr13:97988200-97992200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr13:97988800-97991400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:97988800-97991600	Strong transcription	Primary hematopoietic stem cells	blood
40	chr13:97988800-97991600	Strong transcription	HUVEC	blood vessel
41	chr13:97989200-97991400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr13:97989200-97999000	Weak transcription	Colonic Mucosa	Colon
43	chr13:97989400-97991600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr13:97989400-97993200	Genic enhancers	Liver	Liver
45	chr13:97989400-97996600	Weak transcription	Fetal Thymus	thymus
46	chr13:97989400-97999200	Weak transcription	NH-A	brain
47	chr13:97989600-97991400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:97989600-97998600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:97989600-97999400	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr13:97989800-97995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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