Variant report

Variant	rs555578675
Chromosome Location	chr3:143021842-143021843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv520125	chr3:143020870-143029022	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143008000-143025000	Weak transcription	Gastric	stomach
2	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
3	chr3:143017000-143022400	Enhancers	Fetal Thymus	thymus
4	chr3:143017000-143022600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:143018200-143026400	Weak transcription	GM12878-XiMat	blood
6	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:143019000-143022600	Enhancers	Dnd41	blood
8	chr3:143019600-143026600	Enhancers	Fetal Lung	lung
9	chr3:143020200-143023200	Enhancers	K562	blood
10	chr3:143020400-143022600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:143020400-143022800	Enhancers	Spleen	Spleen
12	chr3:143020600-143022600	Enhancers	NHDF-Ad	bronchial
13	chr3:143020800-143022000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:143020800-143022600	Enhancers	Placenta	Placenta
15	chr3:143020800-143022800	Enhancers	Fetal Muscle Leg	muscle
16	chr3:143020800-143023200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:143020800-143023400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr3:143021000-143022000	Enhancers	NHLF	lung
19	chr3:143021000-143022200	Enhancers	HMEC	breast
20	chr3:143021000-143022600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:143021000-143026600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr3:143021200-143022400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:143021200-143022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:143021200-143029000	Weak transcription	Primary T cells from cord blood	blood
25	chr3:143021400-143022000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:143021400-143022000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:143021400-143022000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:143021400-143022000	Enhancers	Esophagus	oesophagus
29	chr3:143021400-143022000	Flanking Active TSS	HUVEC	blood vessel
30	chr3:143021400-143022000	Enhancers	NH-A	brain
31	chr3:143021400-143022000	Flanking Active TSS	Osteobl	bone
32	chr3:143021400-143022200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:143021400-143022200	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr3:143021400-143022200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:143021400-143022200	Enhancers	NHEK	skin
36	chr3:143021400-143022400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr3:143021400-143022400	Enhancers	Right Atrium	heart
38	chr3:143021400-143022600	Enhancers	Adipose Nuclei	Adipose
39	chr3:143021400-143022800	Enhancers	Left Ventricle	heart
40	chr3:143021400-143024200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr3:143021600-143022000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:143021600-143022000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:143021600-143022000	Enhancers	Fetal Muscle Trunk	muscle
44	chr3:143021600-143022000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr3:143021600-143022000	Active TSS	Hela-S3	cervix
46	chr3:143021600-143022400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:143021600-143026400	Weak transcription	Lung	lung
48	chr3:143021800-143022000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:143021800-143022000	Flanking Active TSS	HSMM	muscle
50	chr3:143021800-143022200	Weak transcription	Psoas Muscle	Psoas

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