Variant report

Variant	rs555583294
Chromosome Location	chr11:85916990-85916991
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3432079	chr11:85916728-85917251	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85908600-85920000	Weak transcription	Small Intestine	intestine
2	chr11:85914000-85918200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:85914000-85918600	Enhancers	Placenta	Placenta
4	chr11:85914000-85920800	Weak transcription	Ovary	ovary
5	chr11:85914000-85926200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:85914200-85917400	Weak transcription	Fetal Heart	heart
7	chr11:85914200-85917600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr11:85914400-85917000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:85914400-85917000	Weak transcription	Fetal Lung	lung
10	chr11:85914400-85917600	Enhancers	Primary B cells from cord blood	blood
11	chr11:85914600-85919200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:85914800-85919400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:85915000-85919400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:85915000-85920000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr11:85915600-85917600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr11:85916400-85917200	Enhancers	Hela-S3	cervix
17	chr11:85916400-85917800	Enhancers	HepG2	liver
18	chr11:85916600-85917400	Enhancers	Adipose Nuclei	Adipose
19	chr11:85916800-85917600	Enhancers	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links