Variant report

Variant	rs555596738
Chromosome Location	chr10:49916221-49916222
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr10:49916220-49916487	ECC-1	luminal epithelium:	n/a	n/a
2	USF1	chr10:49916201-49916540	H1-hESC	embryonic stem cell:	n/a	n/a
3	USF1	chr10:49916202-49916471	H1-hESC	embryonic stem cell:	n/a	n/a
4	USF1	chr10:49916122-49916529	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
WDFY4	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1049259	chr10:49901984-49924310	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv512162	chr10:49915860-49919375	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49897000-49918200	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr10:49907400-49917800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:49908200-49922800	Weak transcription	Spleen	Spleen
4	chr10:49910800-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:49911000-49917800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49912200-49916400	Enhancers	Fetal Heart	heart
8	chr10:49913000-49930600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:49913200-49916400	Weak transcription	Lung	lung
10	chr10:49914200-49922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:49914800-49917000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:49915200-49916600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:49915200-49916800	Enhancers	Aorta	Aorta
14	chr10:49915200-49916800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:49915200-49917200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:49915400-49916600	Enhancers	Brain Cingulate Gyrus	brain
17	chr10:49915400-49916800	Enhancers	Right Atrium	heart
18	chr10:49915400-49918800	Enhancers	Fetal Muscle Leg	muscle
19	chr10:49915400-49921600	Strong transcription	GM12878-XiMat	blood
20	chr10:49915600-49916600	Enhancers	Adipose Nuclei	Adipose
21	chr10:49915600-49916600	Enhancers	Stomach Smooth Muscle	stomach
22	chr10:49915600-49916800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:49915600-49916800	Enhancers	HSMMtube	muscle
24	chr10:49915800-49916600	Enhancers	Brain Substantia Nigra	brain
25	chr10:49915800-49916600	Enhancers	Fetal Lung	lung
26	chr10:49915800-49916600	Enhancers	Ovary	ovary
27	chr10:49915800-49917000	Enhancers	Brain Hippocampus Middle	brain
28	chr10:49915800-49917000	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr10:49916000-49916600	Enhancers	Stomach Mucosa	stomach
30	chr10:49916000-49916600	Bivalent Enhancer	HSMM	muscle
31	chr10:49916200-49916400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:49916200-49916400	Enhancers	Fetal Muscle Trunk	muscle
33	chr10:49916200-49916600	Strong transcription	Primary B cells from cord blood	blood
34	chr10:49916200-49916600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:49916200-49916600	Weak transcription	Left Ventricle	heart
36	chr10:49916200-49916600	Weak transcription	Right Ventricle	heart
37	chr10:49916200-49916800	Enhancers	Placenta	Placenta

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