Variant report

Variant	rs555605939
Chromosome Location	chr11:102067230-102067231
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:102060953..102063076-chr11:102065365..102067692,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv556141	chr11:101988061-102207851	Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv530646	chr11:102000840-102238992	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv832251	chr11:102012295-102181744	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1043388	chr11:102017719-102172857	Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv2524266	chr11:102066175-102067766	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102029200-102067600	Weak transcription	HSMMtube	muscle
2	chr11:102034600-102076800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:102036000-102069400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:102043800-102077000	Weak transcription	Esophagus	oesophagus
5	chr11:102043800-102100400	Weak transcription	Pancreas	Pancrea
6	chr11:102046800-102076600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:102048400-102073600	Weak transcription	Psoas Muscle	Psoas
8	chr11:102048400-102077200	Weak transcription	Lung	lung
9	chr11:102050400-102076600	Weak transcription	Placenta	Placenta
10	chr11:102051400-102076600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:102052000-102076600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:102056000-102078400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:102056200-102074800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr11:102058200-102076800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:102058600-102068200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:102059200-102067600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:102059600-102068800	Weak transcription	Fetal Kidney	kidney
18	chr11:102059600-102100400	Weak transcription	Gastric	stomach
19	chr11:102061400-102073400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:102062800-102076600	Weak transcription	Fetal Stomach	stomach
21	chr11:102062800-102076600	Weak transcription	Left Ventricle	heart
22	chr11:102062800-102096400	Weak transcription	Small Intestine	intestine
23	chr11:102063000-102067600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:102063000-102076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:102063200-102069800	Strong transcription	HSMM	muscle
26	chr11:102063600-102069400	Weak transcription	Colon Smooth Muscle	Colon
27	chr11:102063800-102073400	Weak transcription	NHLF	lung
28	chr11:102063800-102076600	Weak transcription	Liver	Liver
29	chr11:102063800-102096600	Weak transcription	Stomach Mucosa	stomach
30	chr11:102064000-102068200	Weak transcription	HMEC	breast
31	chr11:102064000-102068600	Weak transcription	Ovary	ovary
32	chr11:102064000-102075200	Weak transcription	Fetal Intestine Large	intestine
33	chr11:102064000-102094400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:102064000-102105400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:102064600-102067800	Weak transcription	Fetal Heart	heart
36	chr11:102065400-102069400	Weak transcription	Aorta	Aorta
37	chr11:102065400-102076600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:102065800-102067400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:102066000-102067400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:102066000-102071400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr11:102066000-102074800	Weak transcription	Osteobl	bone
42	chr11:102066000-102076600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:102066400-102067600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:102066400-102073800	Enhancers	HepG2	liver
45	chr11:102066400-102076600	Weak transcription	Fetal Muscle Leg	muscle
46	chr11:102066600-102067400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:102066600-102068400	Weak transcription	Fetal Intestine Small	intestine
48	chr11:102066600-102068800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr11:102066600-102068800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:102066600-102069200	Enhancers	NHDF-Ad	bronchial

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