Variant report

Variant	rs555620955
Chromosome Location	chr4:107025172-107025173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107023929..107026888-chr4:107039825..107042203,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799793	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1801716	chr4:107000462-107062671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1849248	chr4:107000462-107062671	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv1850577	chr4:107000462-107062671	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv511247	chr4:107022702-107065220	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv879701	chr4:107024776-107163128	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106997200-107031000	Weak transcription	Psoas Muscle	Psoas
2	chr4:107010200-107025400	Weak transcription	Small Intestine	intestine
3	chr4:107012400-107026800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:107012600-107025200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:107012600-107026200	Weak transcription	Stomach Mucosa	stomach
6	chr4:107012600-107026600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:107012600-107026600	Weak transcription	GM12878-XiMat	blood
8	chr4:107012600-107026600	Weak transcription	HSMM	muscle
9	chr4:107012600-107026800	Weak transcription	Fetal Kidney	kidney
10	chr4:107012600-107029800	Weak transcription	Fetal Brain Male	brain
11	chr4:107012600-107029800	Weak transcription	Dnd41	blood
12	chr4:107012600-107031200	Weak transcription	Brain Angular Gyrus	brain
13	chr4:107012600-107033200	Weak transcription	Osteobl	bone
14	chr4:107012600-107033800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:107012600-107034400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:107012600-107038400	Weak transcription	NHDF-Ad	bronchial
17	chr4:107012800-107025400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr4:107012800-107025400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:107012800-107026200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:107012800-107030600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:107012800-107031400	Weak transcription	HSMMtube	muscle
22	chr4:107012800-107033400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:107013000-107031000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:107014000-107029800	Weak transcription	Brain Germinal Matrix	brain
25	chr4:107014000-107031000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:107014000-107031000	Weak transcription	Fetal Thymus	thymus
27	chr4:107014000-107031200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr4:107014000-107034600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:107014200-107025200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr4:107014200-107026000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:107014200-107026000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr4:107014200-107026000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:107014200-107026200	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:107014200-107026200	Weak transcription	Fetal Brain Female	brain
35	chr4:107014200-107029200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr4:107014200-107030600	Weak transcription	Right Ventricle	heart
37	chr4:107014200-107030800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:107014200-107031000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:107014200-107031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:107014200-107031200	Weak transcription	Colonic Mucosa	Colon
41	chr4:107014200-107031200	Weak transcription	Gastric	stomach
42	chr4:107014400-107025600	Weak transcription	Duodenum Mucosa	Duodenum
43	chr4:107014400-107029400	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:107014400-107031200	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:107014600-107026000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr4:107014600-107031200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:107014800-107025200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr4:107014800-107026000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:107014800-107028600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr4:107014800-107031200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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