Variant report

Variant	rs555626620
Chromosome Location	chr1:78521114-78521115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:78467898..78473745-chr1:78517606..78523860,12	K562	blood:
2	chr1:78475214..78476782-chr1:78520610..78522238,2	K562	blood:
3	chr1:78520206..78525011-chr1:78526646..78528908,4	K562	blood:
4	chr1:78467898..78469708-chr1:78520081..78522686,2	K562	blood:

Variant related genes	Relation type
ENSG00000162616	Chromatin interaction
ENSG00000273338	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434340	chr1:78153780-78607103	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv1013008	chr1:78463173-78958701	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv535012	chr1:78463173-78958701	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv870608	chr1:78520822-78594286	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78513000-78521800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:78513600-78521200	Weak transcription	Stomach Mucosa	stomach
3	chr1:78515400-78521200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr1:78515400-78534200	Weak transcription	HepG2	liver
5	chr1:78517400-78522000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:78517800-78521200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:78519000-78521400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:78519000-78536000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:78519200-78527000	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:78519400-78521200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:78519400-78521200	Weak transcription	Small Intestine	intestine
12	chr1:78519400-78521200	Weak transcription	K562	blood
13	chr1:78519400-78521400	Weak transcription	Placenta	Placenta
14	chr1:78519400-78521400	Weak transcription	Right Atrium	heart
15	chr1:78519400-78521400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:78519800-78526800	Weak transcription	Psoas Muscle	Psoas
17	chr1:78520000-78521400	Enhancers	HUVEC	blood vessel
18	chr1:78520400-78521400	Enhancers	Liver	Liver
19	chr1:78520600-78522000	Enhancers	Pancreas	Pancrea
20	chr1:78520600-78522000	Enhancers	Spleen	Spleen
21	chr1:78520800-78521800	Enhancers	Right Ventricle	heart
22	chr1:78520800-78522000	Enhancers	Left Ventricle	heart
23	chr1:78520800-78523800	Weak transcription	Osteobl	bone
24	chr1:78520800-78524000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:78520800-78526600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:78520800-78526800	Weak transcription	HSMMtube	muscle
27	chr1:78521000-78521200	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr1:78521000-78521200	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr1:78521000-78521600	Enhancers	Fetal Intestine Large	intestine
30	chr1:78521000-78524200	Weak transcription	HSMM	muscle

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