Variant report

Variant	rs555652606
Chromosome Location	chr3:112954448-112954449
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112950520..112952808-chr3:112954208..112956518,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3329447	chr3:112954312-112956510	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112932000-112972800	Weak transcription	Aorta	Aorta
2	chr3:112937000-112954800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:112943600-112960600	Weak transcription	Fetal Thymus	thymus
4	chr3:112947000-112955600	Weak transcription	Fetal Intestine Small	intestine
5	chr3:112949800-112954600	Enhancers	NHEK	skin
6	chr3:112951000-112958800	Weak transcription	Fetal Kidney	kidney
7	chr3:112951200-112954600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:112951200-112958800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:112951200-112959000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:112951200-112967000	Weak transcription	Colonic Mucosa	Colon
11	chr3:112951600-112960200	Weak transcription	NHLF	lung
12	chr3:112951800-112954600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:112952000-112954600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:112952200-112954800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:112952400-112954600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:112952400-112959000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:112953000-112959800	Weak transcription	Fetal Brain Female	brain
18	chr3:112953200-112954800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:112953400-112954600	Enhancers	HSMMtube	muscle
20	chr3:112953800-112954600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr3:112953800-112954600	Enhancers	Fetal Stomach	stomach
22	chr3:112953800-112954600	Enhancers	Rectal Smooth Muscle	rectum
23	chr3:112953800-112955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:112953800-112956200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:112953800-112958400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr3:112953800-112958400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:112953800-112959000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:112953800-112959600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:112953800-112959600	Weak transcription	Esophagus	oesophagus
30	chr3:112953800-112959600	Weak transcription	Fetal Brain Male	brain
31	chr3:112953800-112960600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:112953800-112965600	Weak transcription	Right Atrium	heart
33	chr3:112954000-112956000	Weak transcription	Fetal Muscle Leg	muscle
34	chr3:112954000-112956200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:112954000-112957600	Weak transcription	Ovary	ovary
36	chr3:112954000-112958200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:112954000-112958400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr3:112954000-112958400	Weak transcription	NHDF-Ad	bronchial
39	chr3:112954000-112959000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:112954000-112959600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:112954200-112955000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:112954200-112958200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:112954200-112958800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:112954200-112958800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:112954200-112959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:112954200-112959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr3:112954200-112959600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:112954200-112959600	Weak transcription	Osteobl	bone
49	chr3:112954200-112960400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:112954200-112965600	Weak transcription	Brain Substantia Nigra	brain

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