Variant report

Variant	rs555660599
Chromosome Location	chr9:92869419-92869420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92208153..92210576-chr9:92868061..92870070,3	MCF-7	breast:
2	chr9:92218691..92220524-chr9:92868412..92870856,2	MCF-7	breast:
3	chr9:92212399..92214599-chr9:92867248..92869554,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000130222	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv893563	chr9:92816727-92967125	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92858600-92870200	Weak transcription	Right Atrium	heart
2	chr9:92860800-92870200	Weak transcription	Right Ventricle	heart
3	chr9:92861800-92870200	Weak transcription	Pancreas	Pancrea
4	chr9:92864600-92870200	Weak transcription	Fetal Stomach	stomach
5	chr9:92864800-92870400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr9:92866600-92871800	Enhancers	Fetal Muscle Leg	muscle
7	chr9:92867200-92869800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:92867800-92870200	Weak transcription	Psoas Muscle	Psoas
9	chr9:92868000-92871200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr9:92868800-92869600	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:92868800-92872000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:92869000-92869600	Enhancers	Primary B cells from cord blood	blood
13	chr9:92869000-92869800	Enhancers	Liver	Liver
14	chr9:92869000-92870400	Enhancers	HSMMtube	muscle
15	chr9:92869000-92870800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr9:92869000-92870800	Enhancers	Colon Smooth Muscle	Colon
17	chr9:92869000-92871200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:92869000-92872200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:92869200-92869600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr9:92869200-92869800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:92869200-92869800	Enhancers	NHEK	skin
22	chr9:92869200-92870000	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr9:92869200-92870200	Enhancers	Stomach Mucosa	stomach
24	chr9:92869200-92870800	Enhancers	HSMM	muscle
25	chr9:92869200-92871200	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:92869400-92869600	Enhancers	Primary T cells from cord blood	blood
27	chr9:92869400-92869600	Enhancers	Primary hematopoietic stem cells	blood
28	chr9:92869400-92869600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr9:92869400-92869600	Enhancers	Small Intestine	intestine
30	chr9:92869400-92869800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr9:92869400-92870000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:92869400-92870600	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr9:92869400-92870800	Enhancers	Lung	lung
34	chr9:92869400-92871000	Enhancers	Adipose Nuclei	Adipose
35	chr9:92869400-92871000	Enhancers	Fetal Lung	lung
36	chr9:92869400-92871200	Enhancers	Brain Germinal Matrix	brain
37	chr9:92869400-92871200	Enhancers	Left Ventricle	heart
38	chr9:92869400-92871600	Enhancers	Ovary	ovary

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