Variant report

Variant	rs555666282
Chromosome Location	chr4:125528789-125528790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv966542	chr4:125528212-125539843	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125506000-125538800	Weak transcription	Ovary	ovary
2	chr4:125518400-125538800	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:125522800-125539200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:125523800-125552800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:125524600-125538600	Weak transcription	Lung	lung
6	chr4:125524800-125546000	Weak transcription	HUVEC	blood vessel
7	chr4:125524800-125553000	Weak transcription	HSMMtube	muscle
8	chr4:125526200-125539400	Weak transcription	Adipose Nuclei	Adipose
9	chr4:125526400-125545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:125526800-125529000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links