Variant report

Variant	rs555669073
Chromosome Location	chr10:6225298-6225299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6219777..6221661-chr10:6223252..6225930,2	MCF-7	breast:
2	chr10:6224374..6226105-chr10:6243293..6245083,2	K562	blood:
3	chr10:6223792..6226013-chr10:6250745..6253206,2	MCF-7	breast:
4	chr10:6214556..6217350-chr10:6223472..6225536,2	MCF-7	breast:
5	chr10:6223957..6226913-chr10:6228760..6231952,3	K562	blood:
6	chr10:6213961..6227951-chr10:6240689..6247831,28	MCF-7	breast:
7	chr10:6221913..6225643-chr10:6242936..6247292,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1040721	chr10:6155144-6322566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv540476	chr10:6155144-6322566	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv894817	chr10:6173416-6251252	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
6	nsv894819	chr10:6210740-6226889	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv894820	chr10:6210740-6226889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv894821	chr10:6210740-6228226	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv894822	chr10:6210740-6228226	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv466725	chr10:6213807-6228226	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv549910	chr10:6213807-6228226	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv894823	chr10:6213960-6228226	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv894824	chr10:6213980-6228226	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv894825	chr10:6214060-6226889	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv894826	chr10:6214060-6228226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv894827	chr10:6215091-6226889	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv466726	chr10:6215091-6227382	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv549911	chr10:6215091-6227382	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv894828	chr10:6215091-6228226	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv894829	chr10:6215257-6227382	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv894830	chr10:6215257-6228226	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv894831	chr10:6215257-6236332	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
24	esv3345203	chr10:6224846-6226744	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6207000-6244400	Weak transcription	Hela-S3	cervix
2	chr10:6214200-6239800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:6215000-6237200	Weak transcription	Primary B cells from cord blood	blood
4	chr10:6216200-6237400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:6216600-6230000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:6218800-6227800	Weak transcription	NHDF-Ad	bronchial
7	chr10:6219000-6240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:6219200-6226800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:6219200-6227000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:6219200-6227400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:6219200-6228200	Weak transcription	HMEC	breast
12	chr10:6219200-6228200	Weak transcription	NH-A	brain
13	chr10:6219200-6232800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:6219200-6236400	Weak transcription	Primary T cells from cord blood	blood
15	chr10:6219200-6240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:6219200-6242200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:6219200-6242400	Weak transcription	NHEK	skin
18	chr10:6220200-6228200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:6220400-6227200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:6220400-6227200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:6220400-6233200	Weak transcription	NHLF	lung
22	chr10:6220400-6242600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:6220800-6237200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:6221600-6227200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:6221600-6230200	Weak transcription	Right Atrium	heart
26	chr10:6222800-6242800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:6223600-6225400	Enhancers	Adipose Nuclei	Adipose
28	chr10:6223800-6226800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:6224000-6225400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:6224000-6225600	Enhancers	Fetal Muscle Leg	muscle
31	chr10:6224200-6225400	Enhancers	Brain Angular Gyrus	brain
32	chr10:6224200-6225400	Enhancers	Brain Cingulate Gyrus	brain
33	chr10:6224200-6225400	Enhancers	Brain Hippocampus Middle	brain
34	chr10:6224200-6225400	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr10:6224200-6225400	Enhancers	Fetal Thymus	thymus
36	chr10:6224200-6225400	Enhancers	HSMM	muscle
37	chr10:6224200-6225600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr10:6224400-6225400	Enhancers	Brain Anterior Caudate	brain
39	chr10:6224400-6228200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:6224600-6225400	Enhancers	Brain Substantia Nigra	brain
41	chr10:6224600-6225400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr10:6224600-6225400	Enhancers	GM12878-XiMat	blood
43	chr10:6224600-6242000	Weak transcription	A549	lung
44	chr10:6224800-6225400	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr10:6224800-6225400	Enhancers	Stomach Mucosa	stomach
46	chr10:6224800-6225400	Enhancers	Thymus	Thymus
47	chr10:6224800-6225600	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:6224800-6227000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:6224800-6230000	Weak transcription	Fetal Heart	heart
50	chr10:6224800-6232200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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