The 2.0 version of rSNPBase

Variant report

Variant rs555669750
Chromosome Location chr6:150518395-150518396
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:150499600-150519600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr6:150514800-150524000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr6:150515400-150519600 Weak transcription Fetal Brain Male brain
4 chr6:150516400-150518400 Enhancers Rectal Mucosa Donor 31 rectum
5 chr6:150516400-150519000 Enhancers Skeletal Muscle Female skeletal muscle
6 chr6:150516800-150518800 Enhancers Primary hematopoietic stem cells short term culture blood
7 chr6:150516800-150518800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr6:150516800-150518800 Enhancers Fetal Intestine Large intestine
9 chr6:150516800-150518800 Enhancers Fetal Intestine Small intestine
10 chr6:150516800-150518800 Enhancers Fetal Muscle Leg muscle
11 chr6:150517000-150518400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr6:150517000-150518600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:150517000-150518600 Enhancers HMEC breast
14 chr6:150517000-150518600 Enhancers NHEK skin
15 chr6:150517000-150519000 Enhancers Colonic Mucosa Colon
16 chr6:150517200-150518400 Enhancers Esophagus oesophagus
17 chr6:150517200-150518400 Enhancers Rectal Smooth Muscle rectum
18 chr6:150517400-150518400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr6:150517400-150518400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr6:150517400-150519000 Enhancers Skeletal Muscle Male skeletal muscle
21 chr6:150517400-150519800 Weak transcription K562 blood
22 chr6:150517600-150529200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr6:150517800-150518600 Enhancers Fetal Brain Female brain
24 chr6:150518000-150518400 Enhancers Breast Myoepithelial Primary Cells Breast
25 chr6:150518000-150518600 Enhancers Placenta Placenta
26 chr6:150518000-150518600 Enhancers Psoas Muscle Psoas
27 chr6:150518000-150518600 Enhancers Right Ventricle heart
28 chr6:150518000-150522200 Enhancers Left Ventricle heart
29 chr6:150518200-150518400 Enhancers Spleen Spleen
30 chr6:150518200-150518600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr6:150518200-150518600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
32 chr6:150518200-150518600 Enhancers Fetal Muscle Trunk muscle
33 chr6:150518200-150518600 Enhancers Lung lung
34 chr6:150518200-150518600 Enhancers Pancreas Pancrea
35 chr6:150518200-150518600 Flanking Active TSS Rectal Mucosa Donor 29 rectum
36 chr6:150518200-150518600 Enhancers Sigmoid Colon Sigmoid Colon
37 chr6:150518200-150520000 Enhancers Right Atrium heart
38 chr6:150518200-150520800 Active TSS Duodenum Mucosa Duodenum
39 chr6:150518200-150523000 Weak transcription Stomach Mucosa stomach
40 chr6:150518200-150530800 Enhancers Fetal Heart heart

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Last update: Aug 31, 2015