Variant report

Variant	rs555689517
Chromosome Location	chr10:118237645-118237646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv819162	chr10:118237197-118238237	Weak transcription Enhancers Strong transcription	miRNA target site	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118230800-118240600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:118231200-118238200	Strong transcription	NHEK	skin
3	chr10:118231200-118238600	Strong transcription	HMEC	breast
4	chr10:118231400-118239400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118236400-118237800	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:118236400-118238400	Enhancers	Rectal Smooth Muscle	rectum
7	chr10:118237000-118237800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:118237200-118238000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:118237200-118238200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:118237600-118238000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr10:118237600-118238200	Enhancers	Fetal Muscle Leg	muscle
12	chr10:118237600-118238600	Enhancers	Fetal Stomach	stomach
13	chr10:118237600-118238800	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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