Variant report

Variant	rs555703640
Chromosome Location	chr4:8429764-8429765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8416707..8419298-chr4:8428396..8430193,3	MCF-7	breast:
2	chr4:8428067..8433323-chr4:8440948..8445760,8	K562	blood:
3	chr4:8429725..8430462-chrX:12992795..12993539,2	HCT-116	colon:
4	chr4:8414211..8417979-chr4:8429248..8432423,3	MCF-7	breast:
5	chr4:8428810..8430394-chr4:8440724..8444143,3	K562	blood:
6	chr4:8429704..8431761-chr4:8439023..8440743,2	MCF-7	breast:
7	chr4:8429518..8431924-chr4:8437588..8440150,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155275	Chromatin interaction
ENSG00000205542	Chromatin interaction
ENSG00000087008	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv461220	chr4:8372944-8458394	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv593638	chr4:8372944-8458394	Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv470014	chr4:8390646-8429817	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv964028	chr4:8418957-8430160	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3439603	chr4:8428877-8431425	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8428200-8431200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:8428800-8429800	Flanking Active TSS	Brain Cingulate Gyrus	brain
3	chr4:8428800-8430000	Active TSS	Right Atrium	heart
4	chr4:8429000-8429800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:8429000-8429800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:8429000-8429800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:8429000-8429800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
8	chr4:8429000-8429800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr4:8429000-8429800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:8429000-8429800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:8429000-8429800	Flanking Active TSS	Liver	Liver
12	chr4:8429000-8429800	Flanking Active TSS	Brain Angular Gyrus	brain
13	chr4:8429000-8429800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr4:8429000-8429800	Flanking Active TSS	Colonic Mucosa	Colon
15	chr4:8429000-8429800	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr4:8429000-8429800	Flanking Active TSS	Fetal Brain Female	brain
17	chr4:8429000-8429800	Flanking Active TSS	Fetal Stomach	stomach
18	chr4:8429000-8429800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
19	chr4:8429000-8429800	Flanking Active TSS	Right Ventricle	heart
20	chr4:8429000-8429800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr4:8429000-8429800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr4:8429000-8429800	Flanking Active TSS	Dnd41	blood
23	chr4:8429000-8429800	Flanking Active TSS	HSMMtube	muscle
24	chr4:8429000-8429800	Flanking Active TSS	HUVEC	blood vessel
25	chr4:8429000-8430000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr4:8429000-8430400	Active TSS	NHDF-Ad	bronchial
27	chr4:8429000-8431000	Active TSS	Hela-S3	cervix
28	chr4:8429200-8429800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:8429200-8429800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:8429200-8429800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr4:8429200-8429800	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr4:8429200-8429800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr4:8429200-8429800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:8429200-8429800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr4:8429200-8429800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr4:8429200-8429800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr4:8429200-8429800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr4:8429200-8429800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:8429200-8429800	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr4:8429200-8429800	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr4:8429200-8429800	Flanking Active TSS	Brain Germinal Matrix	brain
42	chr4:8429200-8429800	Flanking Active TSS	Fetal Lung	lung
43	chr4:8429200-8429800	Flanking Active TSS	Fetal Muscle Trunk	muscle
44	chr4:8429200-8429800	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr4:8429200-8429800	Flanking Active TSS	Placenta	Placenta
46	chr4:8429200-8429800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr4:8429200-8429800	Flanking Active TSS	GM12878-XiMat	blood
48	chr4:8429200-8429800	Flanking Active TSS	HMEC	breast
49	chr4:8429200-8429800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr4:8429200-8429800	Flanking Active TSS	NHEK	skin

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