Variant report

Variant	rs555709223
Chromosome Location	chr3:105373008-105373009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:35938087..35938941-chr3:105372532..105373470,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv534224	chr3:105141696-105404293	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv829651	chr3:105203424-105402136	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv877306	chr3:105372196-105495841	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105366000-105377200	Weak transcription	NHDF-Ad	bronchial
2	chr3:105366600-105373600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:105366600-105375400	Weak transcription	NH-A	brain
4	chr3:105366800-105375200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:105366800-105375400	Weak transcription	Osteobl	bone
6	chr3:105367400-105377600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:105368600-105376800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:105368800-105376800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:105368800-105377600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:105368800-105388400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:105368800-105393400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:105369200-105375800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:105369400-105375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:105369600-105375800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:105371000-105374800	Weak transcription	Fetal Heart	heart
16	chr3:105371400-105377400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:105371400-105382200	Weak transcription	Lung	lung
18	chr3:105371800-105377200	Weak transcription	Fetal Stomach	stomach
19	chr3:105372000-105381800	Weak transcription	Pancreas	Pancrea
20	chr3:105372200-105373800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:105372200-105376000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr3:105372200-105377000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:105372200-105380800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:105372200-105387400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:105372400-105376000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:105372400-105376400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr3:105372400-105388000	Weak transcription	Stomach Mucosa	stomach
28	chr3:105372600-105374600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:105372800-105373400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr3:105373000-105377200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:105373000-105377600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:105373000-105381800	Weak transcription	Right Ventricle	heart
33	chr3:105373000-105387800	Weak transcription	Gastric	stomach
34	chr3:105373000-105419600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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