Variant report

Variant	rs555721277
Chromosome Location	chr7:106684374-106684375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NRF1	chr7:106684325-106686054	SK-N-SH	brain:	n/a	chr7:106685248-106685262
2	POLR2A	chr7:106684360-106686151	H1-neurons	neurons:	n/a	n/a
3	REST	chr7:106684185-106687068	H1-neurons	neurons:	n/a	chr7:106685712-106685730 chr7:106685712-106685722
4	MXI1	chr7:106683820-106687315	SK-N-SH	brain:	n/a	chr7:106684881-106684890 chr7:106685010-106685019 chr7:106684992-106685007
5	STAT3	chr7:106684339-106684524	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:106682031..106689663-chr7:106807150..106811711,11	K562	blood:
2	chr7:106682746..106686911-chr7:106807556..106811745,9	K562	blood:
3	chr7:106683838..106685682-chr7:106808625..106810626,2	MCF-7	breast:
4	chr7:106415431..106417500-chr7:106684365..106686505,2	K562	blood:

Variant related genes	Relation type
PRKAR2B	TF binding region
ENSG00000105856	Chromatin interaction
ENSG00000228742	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3440198	chr7:106684366-106686514	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106676400-106684400	Weak transcription	NHLF	lung
2	chr7:106677000-106684400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:106677000-106684600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:106679600-106684400	Weak transcription	Fetal Stomach	stomach
5	chr7:106680000-106684400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:106680200-106684400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:106680400-106684400	Weak transcription	HUVEC	blood vessel
8	chr7:106681400-106684400	Weak transcription	Right Atrium	heart
9	chr7:106681600-106684400	Weak transcription	Adipose Nuclei	Adipose
10	chr7:106681800-106684400	Weak transcription	Stomach Mucosa	stomach
11	chr7:106682200-106684400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:106682400-106684600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:106682600-106684400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr7:106683200-106684600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:106684000-106684400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:106684000-106684400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:106684000-106684400	Enhancers	Brain Germinal Matrix	brain
18	chr7:106684000-106684400	Enhancers	Fetal Kidney	kidney
19	chr7:106684000-106684400	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr7:106684000-106684400	Enhancers	Fetal Lung	lung
21	chr7:106684000-106685000	Flanking Active TSS	K562	blood
22	chr7:106684200-106684400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:106684200-106684400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:106684200-106684400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
25	chr7:106684200-106684400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
26	chr7:106684200-106684400	Enhancers	Primary T cells from cord blood	blood
27	chr7:106684200-106684400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:106684200-106684400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr7:106684200-106684400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:106684200-106684400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr7:106684200-106684400	Enhancers	Brain Cingulate Gyrus	brain
32	chr7:106684200-106684400	Enhancers	Colon Smooth Muscle	Colon
33	chr7:106684200-106684400	Enhancers	Fetal Brain Female	brain
34	chr7:106684200-106684400	Enhancers	NH-A	brain
35	chr7:106684200-106684600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:106684200-106685000	Flanking Active TSS	Fetal Brain Male	brain
37	chr7:106684200-106686400	Active TSS	Stomach Smooth Muscle	stomach

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