Variant report

Variant	rs555737182
Chromosome Location	chr7:2883111-2883112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149858014..149859677-chr7:2882924..2885730,2	MCF-7	breast:
2	chr7:2869377..2877481-chr7:2880306..2885399,15	MCF-7	breast:
3	chr7:2801788..2804432-chr7:2882018..2884117,3	K562	blood:
4	chr7:2726313..2732670-chr7:2878755..2886203,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184270	Chromatin interaction
ENSG00000174945	Chromatin interaction
ENSG00000231357	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1018162	chr7:2817460-2891181	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv538655	chr7:2817460-2891181	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv887313	chr7:2875420-2927120	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv887314	chr7:2875420-2944187	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	esv3333602	chr7:2882776-2885274	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2879800-2883400	Enhancers	Fetal Heart	heart
2	chr7:2881200-2883400	Enhancers	Fetal Brain Male	brain
3	chr7:2881600-2883200	Enhancers	Spleen	Spleen
4	chr7:2881800-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:2882000-2883200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr7:2882000-2883400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr7:2882000-2883400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:2882000-2883400	Flanking Active TSS	Placenta	Placenta
9	chr7:2882000-2883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:2882000-2884400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:2882000-2884600	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr7:2882200-2883200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:2882200-2883200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr7:2882200-2883400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr7:2882200-2883600	Flanking Active TSS	Dnd41	blood
16	chr7:2882400-2883200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
17	chr7:2882400-2883200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:2882400-2883200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:2882400-2883200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:2882400-2883200	Flanking Active TSS	Brain Angular Gyrus	brain
21	chr7:2882400-2883200	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr7:2882400-2883200	Flanking Active TSS	Brain Cingulate Gyrus	brain
23	chr7:2882400-2883200	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr7:2882400-2883200	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr7:2882400-2883200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr7:2882400-2883200	Flanking Active TSS	HepG2	liver
27	chr7:2882400-2883200	Flanking Active TSS	HMEC	breast
28	chr7:2882400-2883200	Flanking Active TSS	NH-A	brain
29	chr7:2882400-2883400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:2882400-2883400	Flanking Active TSS	Hela-S3	cervix
31	chr7:2882400-2883400	Flanking Active TSS	Osteobl	bone
32	chr7:2882400-2883600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr7:2882400-2884400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr7:2882400-2884400	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr7:2882400-2884800	Active TSS	NHLF	lung
36	chr7:2882400-2885000	Active TSS	A549	lung
37	chr7:2882600-2883200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:2882600-2883200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:2882600-2883200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:2882600-2883200	Flanking Active TSS	Fetal Lung	lung
41	chr7:2882600-2883200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr7:2882600-2883200	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr7:2882600-2883200	Flanking Active TSS	GM12878-XiMat	blood
44	chr7:2882600-2883200	Flanking Active TSS	HUVEC	blood vessel
45	chr7:2882600-2883400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr7:2882600-2883400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:2882600-2883400	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr7:2882600-2883400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr7:2882600-2883400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr7:2882600-2883600	Flanking Active TSS	Colonic Mucosa	Colon

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