Variant report

Variant	rs555744696
Chromosome Location	chr11:85886120-85886121
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85778265..85780828-chr11:85883651..85886278,2	K562	blood:
2	chr11:85779660..85782630-chr11:85885174..85887407,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1040400	chr11:85883303-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1043422	chr11:85883840-85898809	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1049658	chr11:85885461-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1049881	chr11:85885684-85898809	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85882600-85887000	Enhancers	Fetal Muscle Leg	muscle
2	chr11:85882600-85887800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:85882600-85890800	Enhancers	Placenta	Placenta
4	chr11:85882600-85891600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:85882800-85886400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:85883200-85888000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:85883200-85891400	Weak transcription	Thymus	Thymus
8	chr11:85883400-85887200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:85883400-85888200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:85883400-85888800	Enhancers	HMEC	breast
11	chr11:85883600-85888000	Enhancers	HUVEC	blood vessel
12	chr11:85883600-85888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:85883600-85889000	Enhancers	Osteobl	bone
14	chr11:85883800-85886200	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:85883800-85886400	Enhancers	Fetal Intestine Small	intestine
16	chr11:85883800-85886600	Enhancers	Fetal Intestine Large	intestine
17	chr11:85883800-85886800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:85883800-85887000	Enhancers	NHDF-Ad	bronchial
19	chr11:85883800-85887000	Enhancers	NHLF	lung
20	chr11:85883800-85887800	Enhancers	HSMMtube	muscle
21	chr11:85883800-85890400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr11:85883800-85890800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:85884000-85886200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:85884000-85886200	Enhancers	Brain Anterior Caudate	brain
25	chr11:85884000-85886200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:85884000-85887000	Enhancers	Right Atrium	heart
27	chr11:85884200-85886200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:85884400-85887400	Weak transcription	GM12878-XiMat	blood
29	chr11:85884600-85887000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:85884600-85888200	Enhancers	Liver	Liver
31	chr11:85884800-85886200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr11:85884800-85887000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr11:85884800-85887000	Enhancers	Fetal Heart	heart
34	chr11:85884800-85888800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:85885000-85886200	Enhancers	Stomach Mucosa	stomach
36	chr11:85885000-85886400	Enhancers	Rectal Smooth Muscle	rectum
37	chr11:85885200-85886400	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:85885200-85886400	Flanking Active TSS	Hela-S3	cervix
39	chr11:85885200-85886600	Enhancers	Left Ventricle	heart
40	chr11:85885200-85887200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:85885200-85888000	Flanking Active TSS	K562	blood
42	chr11:85885200-85888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:85885200-85888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:85885200-85895200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:85885400-85886200	Enhancers	Small Intestine	intestine
46	chr11:85885400-85887000	Enhancers	Right Ventricle	heart
47	chr11:85885600-85886200	Enhancers	Lung	lung
48	chr11:85885600-85886400	Enhancers	Psoas Muscle	Psoas
49	chr11:85885800-85886200	Enhancers	Aorta	Aorta
50	chr11:85885800-85886400	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links