Variant report

Variant	rs555755457
Chromosome Location	chr4:103540861-103540862
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103421697..103423490-chr4:103540373..103542890,2	MCF-7	breast:
2	chr4:103534263..103536665-chr4:103540346..103543565,3	K562	blood:

Variant related genes	Relation type
ENSG00000260651	Chromatin interaction
ENSG00000109320	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830020	chr4:103387343-103581284	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1003618	chr4:103530465-103562161	Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2498239	chr4:103540653-103541980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103483400-103541600	Weak transcription	K562	blood
2	chr4:103513000-103542000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:103517600-103541600	Weak transcription	Right Atrium	heart
4	chr4:103521400-103554400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:103533000-103541000	Weak transcription	Stomach Mucosa	stomach
6	chr4:103533400-103541800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:103534000-103546200	Weak transcription	Small Intestine	intestine
8	chr4:103534800-103541600	Weak transcription	Psoas Muscle	Psoas
9	chr4:103535400-103541600	Weak transcription	Hela-S3	cervix
10	chr4:103536200-103552800	Weak transcription	Ovary	ovary
11	chr4:103536200-103595400	Weak transcription	Colonic Mucosa	Colon
12	chr4:103536400-103541600	Weak transcription	Brain Angular Gyrus	brain
13	chr4:103536400-103542000	Weak transcription	Fetal Brain Male	brain
14	chr4:103536400-103553400	Weak transcription	Fetal Brain Female	brain
15	chr4:103536600-103541800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:103536600-103541800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:103536600-103542000	Weak transcription	Fetal Kidney	kidney
18	chr4:103536600-103550800	Weak transcription	Thymus	Thymus
19	chr4:103536600-103562600	Weak transcription	Brain Germinal Matrix	brain
20	chr4:103536600-103595800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:103536800-103541600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:103536800-103541800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:103536800-103542000	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:103537600-103541600	Weak transcription	Fetal Heart	heart
25	chr4:103537800-103541600	Weak transcription	HUVEC	blood vessel
26	chr4:103537800-103544800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:103537800-103546200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr4:103538000-103541000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:103538000-103541000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:103538000-103541000	Weak transcription	HMEC	breast
31	chr4:103538000-103541000	Weak transcription	NHLF	lung
32	chr4:103538000-103541200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr4:103538000-103541600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:103538000-103544800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:103538000-103545600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr4:103538000-103546600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:103538000-103552800	Weak transcription	Spleen	Spleen
38	chr4:103538200-103541000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:103538200-103541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:103538200-103541000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr4:103538200-103541000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:103538200-103541600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr4:103538200-103541600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:103538200-103541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:103538200-103541600	Weak transcription	Brain Substantia Nigra	brain
46	chr4:103538200-103541600	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:103538200-103541800	Weak transcription	Aorta	Aorta
48	chr4:103538200-103542000	Weak transcription	Left Ventricle	heart
49	chr4:103538200-103542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:103538200-103546200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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