Variant report

Variant	rs555762836
Chromosome Location	chr1:175111405-175111406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825487	chr1:175031609-175113572	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508648	chr1:175056387-175121913	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv522101	chr1:175109517-175151183	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv429924	chr1:175110480-175134314	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175108000-175119800	Weak transcription	Adipose Nuclei	Adipose
2	chr1:175109600-175114000	Weak transcription	Liver	Liver
3	chr1:175110200-175127400	Weak transcription	Left Ventricle	heart
4	chr1:175110600-175111600	Flanking Active TSS	GM12878-XiMat	blood
5	chr1:175110600-175112400	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:175110800-175111600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:175110800-175111800	Enhancers	Fetal Intestine Large	intestine
8	chr1:175110800-175111800	Enhancers	Fetal Intestine Small	intestine
9	chr1:175110800-175112400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:175111000-175111600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:175111000-175111600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:175111000-175111800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:175111200-175111600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:175111200-175111600	Enhancers	HepG2	liver
15	chr1:175111200-175111800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:175111400-175111600	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr1:175111400-175111600	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr1:175111400-175111600	Enhancers	NHEK	skin
19	chr1:175111400-175122600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links