Variant report

Variant	rs555774663
Chromosome Location	chr6:118939965-118939966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:118826989..118829311-chr6:118938215..118940660,2	K562	blood:
2	chr6:118605109..118605668-chr6:118939709..118940369,2	MCF-7	breast:
3	chr6:118829745..118830555-chr6:118939535..118940562,3	MCF-7	breast:
4	chr6:118886488..118887139-chr6:118939697..118940461,3	MCF-7	breast:
5	chr6:118901771..118902663-chr6:118939336..118940142,2	MCF-7	breast:
6	chr6:118888846..118889639-chr6:118939253..118940221,2	MCF-7	breast:
7	chr6:118939806..118940379-chr6:119121824..119122493,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv3451317	chr6:118938758-118947624	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118912200-118966200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:118913000-118940200	Weak transcription	Ovary	ovary
3	chr6:118920800-118951200	Weak transcription	HSMM	muscle
4	chr6:118925000-118945000	Weak transcription	Primary B cells from cord blood	blood
5	chr6:118926400-118940000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:118926600-118947000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:118927000-118965000	Weak transcription	NHLF	lung
8	chr6:118928000-118952000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:118928800-118951800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:118928800-118951800	Weak transcription	Spleen	Spleen
11	chr6:118929200-118947000	Weak transcription	Thymus	Thymus
12	chr6:118931600-118970400	Weak transcription	NH-A	brain
13	chr6:118932800-118943000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:118933200-118940400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:118933400-118940000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:118933600-118946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:118934400-118940200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:118935600-118951400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:118937000-118940200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:118937000-118947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:118937200-118946200	Weak transcription	Dnd41	blood
22	chr6:118937800-118947000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:118938800-118940200	ZNF genes & repeats	Fetal Stomach	stomach
24	chr6:118938800-118940400	ZNF genes & repeats	Fetal Brain Female	brain
25	chr6:118938800-118944600	Weak transcription	Fetal Lung	lung
26	chr6:118939000-118940400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr6:118939000-118940600	Strong transcription	Fetal Muscle Leg	muscle
28	chr6:118939000-118940800	Enhancers	Brain Hippocampus Middle	brain
29	chr6:118939000-118944200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr6:118939200-118940000	Weak transcription	Psoas Muscle	Psoas
31	chr6:118939200-118940400	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:118939200-118940600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:118939200-118943400	Weak transcription	Right Ventricle	heart
34	chr6:118939200-118946000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:118939200-118946400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:118939400-118940200	ZNF genes & repeats	Brain Germinal Matrix	brain
37	chr6:118939400-118940400	Enhancers	Brain Angular Gyrus	brain
38	chr6:118939400-118940800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:118939400-118942400	Enhancers	Primary T cells fromperipheralblood	blood
40	chr6:118939400-118942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:118939600-118940000	Active TSS	Primary hematopoietic stem cells	blood
42	chr6:118939600-118940000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr6:118939600-118940200	Strong transcription	K562	blood
44	chr6:118939600-118940400	Enhancers	Stomach Smooth Muscle	stomach
45	chr6:118939600-118940600	Enhancers	Brain Anterior Caudate	brain
46	chr6:118939600-118940800	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr6:118939600-118940800	Enhancers	Stomach Mucosa	stomach
48	chr6:118939600-118941000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr6:118939600-118941200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr6:118939600-118943600	Weak transcription	Primary T cells from cord blood	blood

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