Variant report

Variant	rs555807392
Chromosome Location	chr2:11034886-11034887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11031200-11044800	Weak transcription	Right Ventricle	heart
2	chr2:11034400-11035000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:11034400-11035200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr2:11034400-11035200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:11034600-11035000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr2:11034600-11035200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr2:11034600-11035200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:11034600-11035200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:11034600-11035400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr2:11034800-11035200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:11034800-11041400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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