Variant report

Variant	rs555829020
Chromosome Location	chr6:35935665-35935666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv3328952	chr6:35935524-35937622	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35923200-35959600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:35934400-35936000	Enhancers	Fetal Intestine Large	intestine
3	chr6:35934600-35937400	Enhancers	Fetal Brain Male	brain
4	chr6:35934800-35935800	Enhancers	Fetal Intestine Small	intestine
5	chr6:35935400-35940000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:35935400-35940000	Weak transcription	Stomach Mucosa	stomach
7	chr6:35935600-35936200	Enhancers	HepG2	liver
8	chr6:35935600-35937600	Weak transcription	Fetal Brain Female	brain
9	chr6:35935600-35938200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:35935600-35940200	Weak transcription	Liver	Liver
11	chr6:35935600-35941000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:35935600-35941400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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