Variant report

Variant	rs555829730
Chromosome Location	chr11:34203732-34203733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34202988..34205235-chr11:34209660..34212363,2	K562	blood:
2	chr11:34198458..34205212-chr11:34376041..34381079,14	MCF-7	breast:
3	chr11:34194502..34196652-chr11:34202672..34204738,2	MCF-7	breast:
4	chr11:34200978..34204921-chr11:34206145..34211160,6	K562	blood:
5	chr11:34201889..34204263-chr11:34210189..34212019,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201867	Chromatin interaction
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196200-34207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:34196400-34206800	Weak transcription	Gastric	stomach
3	chr11:34196400-34207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:34196600-34204400	Weak transcription	HSMM	muscle
5	chr11:34196600-34204800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:34196600-34205800	Weak transcription	Fetal Brain Female	brain
7	chr11:34196600-34206000	Weak transcription	Pancreas	Pancrea
8	chr11:34196600-34206200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:34196600-34207600	Weak transcription	Left Ventricle	heart
10	chr11:34196600-34210200	Weak transcription	HepG2	liver
11	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
12	chr11:34196800-34205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:34196800-34206800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:34197000-34207400	Weak transcription	HSMMtube	muscle
15	chr11:34197400-34204400	Enhancers	GM12878-XiMat	blood
16	chr11:34197400-34205000	Weak transcription	Liver	Liver
17	chr11:34197800-34205200	Enhancers	Brain Hippocampus Middle	brain
18	chr11:34198000-34203800	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:34198000-34204000	Enhancers	Brain Anterior Caudate	brain
20	chr11:34198000-34204000	Enhancers	Brain Substantia Nigra	brain
21	chr11:34198600-34207000	Weak transcription	NHEK	skin
22	chr11:34198800-34207000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr11:34199200-34209800	Weak transcription	A549	lung
24	chr11:34199600-34206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:34199800-34206000	Weak transcription	Brain Germinal Matrix	brain
26	chr11:34201000-34204000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:34201800-34203800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:34201800-34203800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr11:34202000-34205200	Weak transcription	Fetal Kidney	kidney
30	chr11:34202200-34207200	Weak transcription	HMEC	breast
31	chr11:34202400-34207400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:34202400-34207400	Weak transcription	Fetal Lung	lung
33	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:34202800-34206200	Weak transcription	Fetal Thymus	thymus
35	chr11:34203000-34203800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:34203000-34203800	Enhancers	Brain Angular Gyrus	brain
37	chr11:34203000-34203800	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:34203000-34203800	Enhancers	Fetal Muscle Leg	muscle
39	chr11:34203000-34204000	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr11:34203000-34206000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr11:34203200-34203800	Enhancers	Right Atrium	heart
43	chr11:34203200-34203800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:34203200-34204000	Enhancers	Stomach Smooth Muscle	stomach
45	chr11:34203200-34206000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:34203200-34206200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:34203200-34207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:34203400-34203800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
49	chr11:34203400-34203800	Enhancers	Fetal Brain Male	brain
50	chr11:34203400-34204000	Enhancers	Adipose Nuclei	Adipose

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