Variant report

Variant	rs555841743
Chromosome Location	chr15:78344406-78344407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TBC1D2B-4	chr15:78344342-78345090	l_1195_chr15:78344341-78421177_testes
2	lnc-TBC1D2B-4	chr15:78342467-78345090	ucscGeneNc_uc002bfo_2

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1051558	chr15:78315542-78364947	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3384003	chr15:78344218-78344443	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78296200-78358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:78309200-78354200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:78327600-78351400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:78331400-78348600	Weak transcription	A549	lung
5	chr15:78331600-78348600	Weak transcription	K562	blood
6	chr15:78337000-78347800	Weak transcription	Ovary	ovary
7	chr15:78337800-78344600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:78338600-78345400	Enhancers	Duodenum Mucosa	Duodenum
9	chr15:78338800-78344600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:78338800-78344800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:78338800-78347000	Genic enhancers	Fetal Thymus	thymus
12	chr15:78339000-78344800	Enhancers	Colon Smooth Muscle	Colon
13	chr15:78339000-78345000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:78339000-78345000	Enhancers	Small Intestine	intestine
15	chr15:78339000-78345200	Genic enhancers	Fetal Stomach	stomach
16	chr15:78339000-78345400	Enhancers	Primary B cells from cord blood	blood
17	chr15:78339000-78346400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:78339200-78344800	Enhancers	Brain Angular Gyrus	brain
19	chr15:78339200-78344800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr15:78339400-78344600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:78340000-78345200	Enhancers	Right Atrium	heart
22	chr15:78340000-78345200	Enhancers	NH-A	brain
23	chr15:78340200-78344800	Enhancers	Brain Hippocampus Middle	brain
24	chr15:78340800-78346200	Genic enhancers	Liver	Liver
25	chr15:78341200-78345200	Genic enhancers	Fetal Lung	lung
26	chr15:78341400-78344800	Weak transcription	Esophagus	oesophagus
27	chr15:78341400-78344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:78341400-78345600	Enhancers	Brain Cingulate Gyrus	brain
29	chr15:78341800-78344800	Enhancers	Fetal Brain Female	brain
30	chr15:78341800-78345600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:78342000-78344600	Enhancers	Primary B cells from peripheral blood	blood
32	chr15:78342000-78345000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr15:78342000-78345000	Enhancers	Colonic Mucosa	Colon
34	chr15:78342000-78345200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
35	chr15:78342200-78345000	Enhancers	Fetal Intestine Large	intestine
36	chr15:78342200-78345600	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr15:78342400-78344600	Enhancers	Primary T cells fromperipheralblood	blood
38	chr15:78342400-78344600	Enhancers	Dnd41	blood
39	chr15:78342400-78344800	Enhancers	Thymus	Thymus
40	chr15:78342400-78345000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:78342400-78345400	Weak transcription	Aorta	Aorta
42	chr15:78342400-78345400	Enhancers	Brain Anterior Caudate	brain
43	chr15:78342400-78345600	Enhancers	Fetal Heart	heart
44	chr15:78342600-78344800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:78342600-78345000	Weak transcription	Brain Germinal Matrix	brain
46	chr15:78342600-78345200	Genic enhancers	HSMM	muscle
47	chr15:78342600-78345400	Enhancers	Primary hematopoietic stem cells	blood
48	chr15:78342600-78345400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr15:78342600-78345400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:78342600-78348600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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