Variant report

Variant	rs555846238
Chromosome Location	chr1:154159804-154159805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:63)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:63 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr1:154159505-154159934	K562	blood:	n/a	n/a
2	MYC	chr1:154159419-154159906	K562	blood:	n/a	n/a
3	CBX3	chr1:154159565-154159900	K562	blood:	n/a	n/a
4	CEBPB	chr1:154159620-154159916	A549	lung:	n/a	n/a
5	ZNF384	chr1:154159311-154159905	K562	blood:	n/a	n/a
6	POLR2A	chr1:154159549-154159826	K562	blood:	n/a	n/a
7	TBL1XR1	chr1:154159374-154159827	K562	blood:	n/a	n/a
8	MYC	chr1:154159593-154159922	K562	blood:	n/a	n/a
9	CBX3	chr1:154159525-154159938	K562	blood:	n/a	n/a
10	POLR2A	chr1:154159695-154159911	H1-hESC	embryonic stem cell:	n/a	n/a
11	RUNX3	chr1:154159621-154159969	GM12878	blood:	n/a	n/a
12	CEBPB	chr1:154159627-154159909	HepG2	liver:	n/a	n/a
13	FOXA1	chr1:154159608-154159944	HepG2	liver:	n/a	n/a
14	MAFK	chr1:154159334-154159924	K562	blood:	n/a	n/a
15	TRIM28	chr1:154159232-154160029	K562	blood:	n/a	n/a
16	ZMIZ1	chr1:154159248-154159864	K562	blood:	n/a	n/a
17	CEBPB	chr1:154159609-154159880	K562	blood:	n/a	n/a
18	CEBPD	chr1:154158708-154159966	K562	blood:	n/a	n/a
19	POLR2A	chr1:154159443-154160121	H1-hESC	embryonic stem cell:	n/a	n/a
20	MAFK	chr1:154159380-154159912	H1-hESC	embryonic stem cell:	n/a	n/a
21	TEAD4	chr1:154159142-154159987	K562	blood:	n/a	n/a
22	TAL1	chr1:154159192-154159925	K562	blood:	n/a	n/a
23	CEBPB	chr1:154158897-154160345	K562	blood:	n/a	chr1:154159149-154159160
24	TAF7	chr1:154159653-154160038	H1-hESC	embryonic stem cell:	n/a	n/a
25	MAFF	chr1:154159591-154159927	K562	blood:	n/a	chr1:154159793-154159811
26	CEBPB	chr1:154159599-154160194	H1-hESC	embryonic stem cell:	n/a	n/a
27	ARID3A	chr1:154158624-154159915	K562	blood:	n/a	n/a
28	MAFK	chr1:154159750-154159820	HepG2	liver:	n/a	n/a
29	MAX	chr1:154159539-154159826	K562	blood:	n/a	n/a
30	KAP1	chr1:154158534-154159988	U2OS	brain:	n/a	n/a
31	FOXA1	chr1:154158986-154159857	HepG2	liver:	n/a	chr1:154159380-154159395 chr1:154159450-154159462
32	MAZ	chr1:154159424-154159902	K562	blood:	n/a	n/a
33	CEBPD	chr1:154159286-154160016	K562	blood:	n/a	n/a
34	HCFC1	chr1:154159512-154159872	K562	blood:	n/a	n/a
35	EP300	chr1:154158622-154159934	K562	blood:	n/a	chr1:154159453-154159463
36	RUNX3	chr1:154159568-154159964	GM12878	blood:	n/a	n/a
37	MAFF	chr1:154159770-154159864	HepG2	liver:	n/a	chr1:154159793-154159811
38	RCOR1	chr1:154158609-154159949	K562	blood:	n/a	n/a
39	RCOR1	chr1:154159365-154159825	K562	blood:	n/a	n/a
40	GATA2	chr1:154159140-154159942	K562	blood:	n/a	chr1:154159690-154159697 chr1:154159690-154159697 chr1:154159688-154159698 chr1:154159690-154159697
41	TBP	chr1:154159694-154160121	H1-hESC	embryonic stem cell:	n/a	n/a
42	CCNT2	chr1:154159243-154159880	K562	blood:	n/a	n/a
43	ESR1	chr1:154159182-154159843	T-47D	breast:	n/a	n/a
44	POLR2A	chr1:154159613-154159987	H1-hESC	embryonic stem cell:	n/a	n/a
45	FOXA2	chr1:154159562-154159908	HepG2	liver:	n/a	n/a
46	NFE2	chr1:154159788-154159807	GM12878	blood:	n/a	n/a
47	SP1	chr1:154159608-154160042	H1-hESC	embryonic stem cell:	n/a	n/a
48	JUND	chr1:154159349-154159920	K562	blood:	n/a	chr1:154159495-154159504
49	FOXA1	chr1:154159091-154159982	HepG2	liver:	n/a	chr1:154159380-154159395 chr1:154159450-154159462
50	EP300	chr1:154159442-154159845	K562	blood:	n/a	chr1:154159453-154159463

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154159154..154160815-chr1:154163047..154164875,2	MCF-7	breast:
2	chr1:154158539..154161524-chr1:154242189..154245561,3	MCF-7	breast:
3	chr1:154153141..154174161-chr1:154187746..154196033,47	MCF-7	breast:
4	chr1:154145134..154153289-chr1:154153487..154160631,22	K562	blood:
5	chr1:154158467..154161316-chr1:154169815..154172829,3	MCF-7	breast:
6	chr1:154129855..154131682-chr1:154158722..154160655,2	K562	blood:
7	chr1:154159712..154161711-chr1:154198727..154200350,2	K562	blood:
8	chr1:153963252..153965177-chr1:154158511..154161067,3	MCF-7	breast:
9	chr1:154158424..154161181-chr1:154245114..154247197,2	MCF-7	breast:
10	chr1:154156233..154161758-chr1:154162933..154167291,6	K562	blood:
11	chr1:154159143..154160750-chr1:154457957..154460845,2	MCF-7	breast:
12	chr1:153963118..153965520-chr1:154159636..154162394,3	K562	blood:
13	chr1:154158378..154160175-chr1:154161458..154162989,2	K562	blood:
14	chr1:154158089..154161877-chr1:154191453..154195317,5	K562	blood:
15	chr1:154155278..154160143-chr1:154165338..154167782,4	K562	blood:
16	chr1:154149113..154161877-chr1:154185436..154196776,24	K562	blood:
17	chr1:154157620..154160474-chr1:154243122..154244827,3	MCF-7	breast:

No data

Variant related genes	Relation type
TPM3	TF binding region
ENSG00000177954	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000143612	Chromatin interaction
ENSG00000215938	Chromatin interaction
ENSG00000169291	Chromatin interaction
ENSG00000143569	Chromatin interaction
ENSG00000143575	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
5	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
7	esv3453084	chr1:154156328-154161626	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
8	esv3453085	chr1:154156328-154161626	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
9	esv12863	chr1:154158242-154161302	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154156200-154163000	Weak transcription	Psoas Muscle	Psoas
2	chr1:154156400-154163200	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:154156400-154164200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:154156600-154164200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:154156800-154164200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:154157200-154164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:154158400-154160200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr1:154158400-154160200	Enhancers	HepG2	liver
9	chr1:154158400-154160400	Enhancers	Stomach Mucosa	stomach
10	chr1:154158400-154160600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:154158600-154160600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr1:154158800-154160000	Flanking Active TSS	K562	blood
13	chr1:154158800-154160800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
14	chr1:154159000-154160400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr1:154159000-154164600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:154159000-154184400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:154159200-154160000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:154159400-154160200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:154159600-154160400	Enhancers	GM12878-XiMat	blood
20	chr1:154159600-154160800	Enhancers	Pancreas	Pancrea
21	chr1:154159600-154162800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:154159600-154162800	Weak transcription	Hela-S3	cervix
23	chr1:154159600-154163000	Weak transcription	HSMM	muscle
24	chr1:154159600-154163200	Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr1:154159800-154160000	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr1:154159800-154160000	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:154159800-154160000	Enhancers	HSMMtube	muscle
28	chr1:154159800-154160200	Weak transcription	Right Atrium	heart
29	chr1:154159800-154160400	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:154159800-154160400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr1:154159800-154160600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr1:154159800-154160800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr1:154159800-154162600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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