Variant report

Variant	rs555898089
Chromosome Location	chr11:101897798-101897799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362945	chr11:101736547-102114246	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv898333	chr11:101832670-102079986	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3351862	chr11:101897791-101931442	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101895200-101899200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:101896000-101898000	Enhancers	Fetal Brain Female	brain
3	chr11:101896000-101898000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:101896200-101898000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:101896400-101898000	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr11:101896400-101898000	Enhancers	NHEK	skin
7	chr11:101896600-101898000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr11:101897000-101898000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:101897000-101898000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:101897000-101898000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:101897000-101898000	Enhancers	Placenta	Placenta
12	chr11:101897200-101897800	Enhancers	Fetal Lung	lung
13	chr11:101897200-101898000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:101897200-101898000	Enhancers	Fetal Intestine Small	intestine
15	chr11:101897200-101898200	Enhancers	Fetal Intestine Large	intestine
16	chr11:101897200-101898200	Enhancers	Rectal Smooth Muscle	rectum
17	chr11:101897200-101900000	Enhancers	HepG2	liver
18	chr11:101897400-101898000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:101897400-101898000	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links