Variant report

Variant	rs555911788
Chromosome Location	chr11:66884571-66884572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr11:66884560-66884846	H1-hESC	embryonic stem cell:	n/a	chr11:66884659-66884671
2	GATA3	chr11:66884406-66884700	SH-SY5Y	brain:	n/a	chr11:66884569-66884576

No.	Distal block	Cell Line	Cell type
1	chr11:66864238..66866456-chr11:66880720..66884624,3	MCF-7	breast:
2	chr11:66883623..66889678-chr11:67005085..67009894,16	K562	blood:
3	chr11:66847793..66850553-chr11:66883657..66886437,2	MCF-7	breast:

Variant related genes	Relation type
KDM2A	TF binding region
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv3412807	chr11:66884326-66888124	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66879000-66885200	Weak transcription	Right Ventricle	heart
2	chr11:66879200-66884600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:66879200-66885000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:66879200-66885000	Weak transcription	Right Atrium	heart
5	chr11:66879200-66885200	Weak transcription	Left Ventricle	heart
6	chr11:66879400-66884800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:66879400-66884800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:66879400-66885000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:66879600-66884800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:66879600-66884800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:66879600-66884800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:66879600-66885000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:66880400-66885000	Enhancers	Fetal Intestine Small	intestine
14	chr11:66880600-66885000	Enhancers	Fetal Intestine Large	intestine
15	chr11:66881000-66886800	Weak transcription	K562	blood
16	chr11:66881200-66884600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:66881200-66884800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:66881200-66884800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:66881200-66885000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:66881200-66885000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:66881200-66885000	Weak transcription	Esophagus	oesophagus
22	chr11:66881200-66885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:66881200-66885200	Weak transcription	Dnd41	blood
24	chr11:66881400-66884600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:66881400-66885000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:66881600-66884800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:66881800-66884800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:66881800-66885000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:66882000-66885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:66882200-66885000	Weak transcription	Colonic Mucosa	Colon
31	chr11:66882600-66884800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:66882600-66885200	Enhancers	A549	lung
33	chr11:66882800-66885000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:66882800-66885000	Enhancers	Stomach Mucosa	stomach
35	chr11:66883000-66884600	Enhancers	HepG2	liver
36	chr11:66883000-66884800	Weak transcription	Liver	Liver
37	chr11:66883200-66884600	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:66883200-66884600	Enhancers	Primary T cells from cord blood	blood
39	chr11:66883200-66885000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr11:66883400-66884600	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:66883400-66884800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:66883400-66885000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:66883600-66884600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:66883600-66884600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:66883600-66884800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr11:66883600-66884800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:66883600-66884800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr11:66883600-66885000	Enhancers	Brain Hippocampus Middle	brain
49	chr11:66883600-66885000	Enhancers	Fetal Lung	lung
50	chr11:66883600-66885000	Weak transcription	Rectal Mucosa Donor 31	rectum

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