Variant report

Variant	rs555923155
Chromosome Location	chr2:21256521-21256522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3442957	chr2:21255559-21257877	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21234800-21262200	Weak transcription	Ovary	ovary
2	chr2:21235000-21261800	Strong transcription	Fetal Intestine Large	intestine
3	chr2:21254400-21262000	Strong transcription	Fetal Intestine Small	intestine
4	chr2:21255200-21258200	Genic enhancers	Liver	Liver
5	chr2:21255200-21260600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr2:21255400-21256600	Genic enhancers	HepG2	liver
7	chr2:21255400-21262800	Weak transcription	Right Atrium	heart
8	chr2:21256200-21257200	Strong transcription	Left Ventricle	heart
9	chr2:21256200-21261400	Weak transcription	Adipose Nuclei	Adipose
10	chr2:21256400-21258400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links