Variant report

Variant	rs555934187
Chromosome Location	chr18:25440873-25440874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv909478	chr18:25392569-25478085	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv909479	chr18:25398940-25502001	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1055332	chr18:25426081-25459328	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1067550	chr18:25434275-25466837	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv458038	chr18:25437752-25508399	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv576590	chr18:25437752-25508399	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1066584	chr18:25439826-25508399	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv909480	chr18:25440258-25502001	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25439200-25441400	Enhancers	HMEC	breast
2	chr18:25439400-25441200	Enhancers	NHEK	skin
3	chr18:25439400-25442200	Enhancers	Fetal Heart	heart
4	chr18:25439600-25441200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:25439600-25441200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:25439800-25441200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:25440000-25441000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:25440000-25441000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:25440000-25441200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr18:25440000-25441200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr18:25440000-25441200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr18:25440000-25441200	Enhancers	Left Ventricle	heart
13	chr18:25440000-25441600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25440000-25441800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr18:25440000-25441800	Enhancers	Fetal Muscle Leg	muscle
16	chr18:25440000-25441800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:25440200-25444200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr18:25440600-25441000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:25440600-25441000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr18:25440600-25441000	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr18:25440600-25441000	Active TSS	HSMMtube	muscle
22	chr18:25440600-25441200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr18:25440600-25441600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr18:25440600-25441800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr18:25440600-25442400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr18:25440800-25441000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr18:25440800-25441000	Enhancers	Gastric	stomach
28	chr18:25440800-25441200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr18:25440800-25441200	Enhancers	Fetal Muscle Trunk	muscle
30	chr18:25440800-25441200	Flanking Active TSS	Dnd41	blood
31	chr18:25440800-25441200	Active TSS	HepG2	liver
32	chr18:25440800-25441200	Enhancers	Osteobl	bone
33	chr18:25440800-25441400	Weak transcription	HSMM	muscle
34	chr18:25440800-25441800	Enhancers	Psoas Muscle	Psoas
35	chr18:25440800-25441800	Enhancers	Right Ventricle	heart
36	chr18:25440800-25442400	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links