Variant report

Variant	rs555950860
Chromosome Location	chr6:27655374-27655375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27655370..27657742-chr6:27715050..27717959,2	K562	blood:
2	chr6:27559025..27560718-chr6:27653331..27656285,2	K562	blood:
3	chr6:27635489..27641593-chr6:27648456..27655439,10	K562	blood:
4	chr6:27655233..27656837-chr6:27693147..27694855,2	K562	blood:
5	chr6:27653789..27659338-chr6:27659392..27663401,13	K562	blood:
6	chr6:27636299..27636853-chr6:27655225..27655832,2	K562	blood:
7	chr6:27644939..27650269-chr6:27651814..27657274,7	K562	blood:
8	chr6:27486558..27487262-chr6:27654877..27655530,2	MCF-7	breast:
9	chr6:27568300..27570576-chr6:27654240..27656534,2	K562	blood:
10	chr6:27585302..27586142-chr6:27655326..27655973,2	K562	blood:
11	chr6:27518096..27521091-chr6:27655240..27657826,2	K562	blood:
12	chr6:27598725..27601418-chr6:27654092..27655925,2	K562	blood:
13	chr6:27637832..27638430-chr6:27654490..27655382,2	K562	blood:
14	chr6:27114898..27117828-chr6:27655156..27657411,2	MCF-7	breast:
15	chr6:27654225..27656931-chr6:27719778..27721751,2	K562	blood:
16	chr6:27585095..27585874-chr6:27654939..27655471,2	MCF-7	breast:
17	chr6:27104177..27107088-chr6:27654712..27657071,2	K562	blood:
18	chr6:27653465..27656102-chr6:27740718..27743462,2	K562	blood:
19	chr6:27651170..27656145-chr6:27660253..27663653,4	MCF-7	breast:
20	chr6:27652290..27655444-chr6:27857919..27861967,3	K562	blood:
21	chr6:27585038..27585933-chr6:27654899..27655854,3	MCF-7	breast:
22	chr6:27596183..27599052-chr6:27654192..27655700,2	K562	blood:
23	chr6:27655233..27657099-chr6:27693355..27695720,2	K562	blood:
24	chr6:27654652..27657286-chr6:27777694..27780046,3	K562	blood:
25	chr6:27114783..27117247-chr6:27654285..27656648,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000238648	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv2830157	chr6:27634640-27657647	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv518945	chr6:27634640-27668013	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv437481	chr6:27655096-27683572	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27653600-27656600	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr6:27654200-27656600	Active TSS	H1 Cell Line	embryonic stem cell
3	chr6:27654600-27656400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:27654600-27656600	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:27654800-27655400	Flanking Active TSS	NHEK	skin
6	chr6:27654800-27656000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:27654800-27656200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:27654800-27656400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:27654800-27656400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:27654800-27656400	Active TSS	HMEC	breast
11	chr6:27654800-27656600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:27654800-27656600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr6:27654800-27656600	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr6:27654800-27656600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:27654800-27656600	Active TSS	A549	lung
16	chr6:27654800-27656600	Flanking Active TSS	Dnd41	blood
17	chr6:27654800-27657200	Active TSS	K562	blood
18	chr6:27655000-27655400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:27655000-27655400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:27655000-27655400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:27655000-27655400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr6:27655000-27655400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:27655000-27655400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:27655000-27655400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:27655000-27655400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:27655000-27655400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:27655000-27655400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:27655000-27655400	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr6:27655000-27655400	Bivalent/Poised TSS	Fetal Heart	heart
30	chr6:27655000-27655400	Flanking Active TSS	Fetal Intestine Large	intestine
31	chr6:27655000-27655400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
32	chr6:27655000-27655400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
33	chr6:27655000-27655400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
34	chr6:27655000-27655400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr6:27655000-27655400	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr6:27655000-27655400	Bivalent/Poised TSS	Thymus	Thymus
37	chr6:27655000-27655600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr6:27655000-27655600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:27655000-27655600	Flanking Bivalent TSS/Enh	Placenta	Placenta
40	chr6:27655000-27655800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr6:27655000-27655800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
42	chr6:27655000-27655800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:27655000-27656000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr6:27655000-27656000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:27655000-27656000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:27655000-27656000	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:27655000-27656000	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr6:27655000-27656000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:27655000-27656000	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr6:27655000-27656000	Flanking Active TSS	Duodenum Mucosa	Duodenum

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