Variant report

Variant	rs555956896
Chromosome Location	chr9:93645442-93645443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93638591..93640127-chr9:93644373..93647334,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831652	chr9:93527411-93696923	Bivalent Enhancer Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1038685	chr9:93556174-93685729	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1039761	chr9:93598856-93677831	Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1039326	chr9:93598856-93685729	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1053252	chr9:93610132-93699103	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv3436860	chr9:93644631-93648929	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93626000-93647800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:93633400-93645800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:93634000-93645800	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr9:93634000-93646200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:93634000-93646400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:93634000-93666200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:93634400-93646600	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr9:93635600-93646200	Strong transcription	Rectal Mucosa Donor 31	rectum
9	chr9:93636400-93650600	Weak transcription	Liver	Liver
10	chr9:93638800-93646800	Strong transcription	Duodenum Mucosa	Duodenum
11	chr9:93639400-93645600	Strong transcription	Thymus	Thymus
12	chr9:93639400-93645800	Strong transcription	Fetal Thymus	thymus
13	chr9:93639400-93646200	Strong transcription	Fetal Stomach	stomach
14	chr9:93639400-93646400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr9:93639400-93647000	Weak transcription	HMEC	breast
16	chr9:93640000-93646400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr9:93641200-93645600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:93641200-93657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:93641400-93646200	Weak transcription	NHEK	skin
20	chr9:93641800-93646200	Weak transcription	K562	blood
21	chr9:93642400-93646400	Strong transcription	Fetal Intestine Small	intestine
22	chr9:93642600-93646200	Weak transcription	Fetal Kidney	kidney
23	chr9:93643000-93646800	Weak transcription	Right Ventricle	heart
24	chr9:93643000-93666600	Weak transcription	Stomach Mucosa	stomach
25	chr9:93643200-93656800	Weak transcription	Small Intestine	intestine
26	chr9:93643200-93663400	Weak transcription	Adipose Nuclei	Adipose
27	chr9:93643400-93645600	Weak transcription	Colonic Mucosa	Colon
28	chr9:93643400-93646800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:93643400-93651800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:93643400-93652800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:93643600-93665400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:93644200-93645800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr9:93644600-93646000	Strong transcription	Gastric	stomach
34	chr9:93644600-93646000	Weak transcription	GM12878-XiMat	blood
35	chr9:93644600-93646200	Strong transcription	Esophagus	oesophagus
36	chr9:93644600-93646200	Strong transcription	Spleen	Spleen
37	chr9:93644600-93646600	Strong transcription	Primary B cells from cord blood	blood
38	chr9:93644800-93646400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr9:93644800-93646400	Strong transcription	Pancreas	Pancrea
40	chr9:93645200-93646200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:93645200-93646400	Strong transcription	Fetal Intestine Large	intestine
42	chr9:93645200-93646400	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr9:93645400-93646000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:93645400-93646200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:93645400-93646200	Strong transcription	Lung	lung
46	chr9:93645400-93646400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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