Variant report

Variant	rs555991550
Chromosome Location	chr7:79853709-79853710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv526091	chr7:79853447-79854751	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
4	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:79831000-79853800	Weak transcription	Gastric	stomach
6	chr7:79831800-79861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:79832400-79855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:79836000-79859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:79836600-79861000	Weak transcription	HSMMtube	muscle
10	chr7:79840000-79853800	Weak transcription	Brain Anterior Caudate	brain
11	chr7:79841200-79853800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr7:79841200-79854000	Weak transcription	Fetal Intestine Small	intestine
13	chr7:79843000-79862800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:79843400-79853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:79845800-79853800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:79846800-79861000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:79847000-79853800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:79847200-79853800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:79847200-79853800	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:79847200-79854800	Weak transcription	Fetal Kidney	kidney
21	chr7:79847400-79854400	Weak transcription	NHDF-Ad	bronchial
22	chr7:79848600-79854400	Weak transcription	Osteobl	bone
23	chr7:79848800-79860600	Weak transcription	NHEK	skin
24	chr7:79849000-79853800	Weak transcription	Brain Angular Gyrus	brain
25	chr7:79849000-79854400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:79849200-79854000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:79849200-79859600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:79849400-79854400	Weak transcription	HSMM	muscle
29	chr7:79849400-79859400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:79849400-79860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:79849600-79853800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr7:79849600-79854800	Weak transcription	Ovary	ovary
33	chr7:79849600-79859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:79849600-79860600	Weak transcription	HMEC	breast
35	chr7:79850000-79854400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:79850000-79857400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr7:79850200-79860600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:79850200-79861000	Weak transcription	NHLF	lung
39	chr7:79850400-79855800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr7:79850400-79866200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:79851000-79854200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:79851600-79859800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:79851600-79860800	Weak transcription	A549	lung
44	chr7:79852000-79859000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:79852200-79861000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:79852400-79853800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:79852400-79854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:79852400-79854200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr7:79852600-79853800	Weak transcription	Fetal Lung	lung
50	chr7:79853000-79855200	Enhancers	Cortex derived primary cultured neurospheres	brain

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