Variant report

Variant	rs555995290
Chromosome Location	chr11:93177629-93177630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv508649	chr11:93140899-93181092	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93177400-93178400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:93177400-93178800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:93177600-93177800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:93177600-93177800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:93177600-93178000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:93177600-93178000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:93177600-93178000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:93177600-93178000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:93177600-93178200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:93177600-93178400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:93177600-93178400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:93177600-93178400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:93177600-93178400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:93177600-93178400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr11:93177600-93178400	Enhancers	K562	blood
16	chr11:93177600-93178600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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