Variant report

Variant	rs555996712
Chromosome Location	chr10:99531695-99531696
allele	-/GCC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3390726	chr10:99530862-99532860	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99530200-99532200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
2	chr10:99530400-99532200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr10:99530600-99532000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr10:99530600-99532000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr10:99530600-99532200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:99530600-99532200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr10:99530800-99532000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:99530800-99532000	Active TSS	Brain Angular Gyrus	brain
9	chr10:99530800-99532000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
10	chr10:99530800-99532000	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr10:99530800-99532000	Bivalent/Poised TSS	Psoas Muscle	Psoas
12	chr10:99530800-99532000	Bivalent Enhancer	Spleen	Spleen
13	chr10:99530800-99532200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr10:99530800-99532200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
15	chr10:99530800-99532200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:99530800-99532200	Bivalent/Poised TSS	Fetal Brain Female	brain
17	chr10:99530800-99532400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
18	chr10:99530800-99532400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
19	chr10:99531000-99531800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:99531000-99532000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:99531000-99532000	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr10:99531000-99532000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
23	chr10:99531000-99532000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:99531000-99532000	Bivalent Enhancer	Lung	lung
25	chr10:99531000-99532000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
26	chr10:99531000-99532000	Bivalent/Poised TSS	A549	lung
27	chr10:99531000-99532000	Bivalent/Poised TSS	HepG2	liver
28	chr10:99531000-99532200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:99531200-99531800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:99531400-99531800	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:99531400-99531800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:99531400-99531800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:99531400-99531800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:99531400-99531800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr10:99531400-99531800	Active TSS	Gastric	stomach
36	chr10:99531400-99531800	Active TSS	Pancreas	Pancrea
37	chr10:99531400-99532000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
38	chr10:99531400-99532000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr10:99531400-99532000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
40	chr10:99531400-99532000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
41	chr10:99531400-99532000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:99531400-99532000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:99531400-99532000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr10:99531400-99532000	Active TSS	Right Atrium	heart
45	chr10:99531400-99532000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr10:99531400-99532000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
47	chr10:99531400-99532000	Active TSS	K562	blood
48	chr10:99531400-99532200	Active TSS	Brain Anterior Caudate	brain
49	chr10:99531400-99532200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr10:99531600-99531800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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