Variant report

Variant	rs556039385
Chromosome Location	chr3:42898590-42898591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429579	chr3:42898402-42907671	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42893400-42906000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:42894800-42912800	Weak transcription	Right Atrium	heart
3	chr3:42897000-42898600	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:42897400-42898600	Enhancers	Primary B cells from cord blood	blood
5	chr3:42897800-42905800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:42897800-42913400	Weak transcription	Pancreas	Pancrea
7	chr3:42898000-42898600	Strong transcription	Placenta	Placenta
8	chr3:42898000-42899000	Enhancers	HepG2	liver
9	chr3:42898400-42899000	Flanking Active TSS	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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