Variant report

Variant	rs556059480
Chromosome Location	chr4:143486605-143486606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143391421..143397876-chr4:143484529..143495051,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414468	chr4:143486441-143486633	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143472600-143486800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:143475600-143488000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143477800-143487000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143478000-143486800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:143478800-143488000	Weak transcription	Fetal Intestine Large	intestine
6	chr4:143479200-143487600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:143479200-143488400	Weak transcription	Pancreas	Pancrea
8	chr4:143480200-143487000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:143480600-143487800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:143481400-143488400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:143481600-143488400	Weak transcription	Fetal Lung	lung
12	chr4:143481600-143488600	Weak transcription	Osteobl	bone
13	chr4:143482800-143486800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr4:143483200-143486800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:143484200-143489000	Weak transcription	Fetal Heart	heart
16	chr4:143485200-143486800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:143485200-143488400	Weak transcription	Thymus	Thymus
18	chr4:143485200-143489200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:143485400-143488400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:143485600-143486800	Weak transcription	HMEC	breast
21	chr4:143486000-143486800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr4:143486000-143486800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:143486200-143486800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr4:143486400-143486800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:143486400-143486800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:143486400-143486800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr4:143486400-143486800	Enhancers	NHEK	skin
28	chr4:143486400-143487000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:143486400-143487400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:143486600-143486800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:143486600-143486800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:143486600-143487000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr4:143486600-143487000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
34	chr4:143486600-143487200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:143486600-143487200	Enhancers	NHDF-Ad	bronchial

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