Variant report

Variant	rs556094418
Chromosome Location	chr10:25278052-25278053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:25277210..25278984-chr10:25279762..25281866,2	K562	blood:
2	chr10:25011866..25014535-chr10:25277806..25280414,2	K562	blood:
3	chr10:25241921..25243506-chr10:25276442..25278938,2	K562	blood:

Variant related genes	Relation type
ENSG00000107863	Chromatin interaction
ENSG00000273107	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452797	chr10:25276796-25278244	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3452808	chr10:25276796-25278244	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25264400-25281800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:25264600-25292200	Weak transcription	Ovary	ovary
3	chr10:25272400-25281000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25274200-25278200	Weak transcription	A549	lung
5	chr10:25275400-25278400	Enhancers	Brain Hippocampus Middle	brain
6	chr10:25276600-25280400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:25277000-25278200	Weak transcription	Hela-S3	cervix
8	chr10:25277400-25278400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:25277400-25278600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:25277600-25278400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:25277600-25278400	Enhancers	Brain Anterior Caudate	brain
12	chr10:25277600-25278400	Enhancers	Brain Cingulate Gyrus	brain
13	chr10:25277600-25278400	Enhancers	Brain Substantia Nigra	brain
14	chr10:25277600-25278600	Enhancers	Fetal Brain Male	brain
15	chr10:25277800-25278200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:25277800-25278400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:25277800-25278400	Enhancers	Brain Angular Gyrus	brain
18	chr10:25277800-25278400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:25277800-25278400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:25277800-25278400	Enhancers	Fetal Thymus	thymus
21	chr10:25277800-25278400	Enhancers	Gastric	stomach
22	chr10:25277800-25278400	Enhancers	Left Ventricle	heart
23	chr10:25277800-25278400	Enhancers	Pancreas	Pancrea
24	chr10:25277800-25278400	Enhancers	Right Atrium	heart
25	chr10:25277800-25278400	Enhancers	Spleen	Spleen
26	chr10:25277800-25278400	Enhancers	HUVEC	blood vessel
27	chr10:25277800-25278400	Flanking Active TSS	K562	blood
28	chr10:25277800-25278600	Enhancers	Fetal Brain Female	brain
29	chr10:25277800-25279200	Enhancers	Adipose Nuclei	Adipose
30	chr10:25278000-25278200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:25278000-25278400	Enhancers	Primary hematopoietic stem cells	blood

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