Variant report

Variant	rs556116593
Chromosome Location	chr3:140868032-140868033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140862626..140865076-chr3:140865610..140868413,2	MCF-7	breast:
2	chr3:140867484..140869090-chr3:140909634..140911456,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140847200-140869000	Weak transcription	Right Ventricle	heart
2	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:140862600-140868800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:140863000-140870600	Weak transcription	Fetal Lung	lung
5	chr3:140863800-140871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:140863800-140872200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:140864600-140870600	Weak transcription	Right Atrium	heart
8	chr3:140864600-140873200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:140865800-140869200	Strong transcription	Fetal Muscle Leg	muscle
10	chr3:140865800-140870200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:140866000-140869000	Enhancers	Pancreas	Pancrea
12	chr3:140866600-140868800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:140866800-140868400	Weak transcription	Dnd41	blood
14	chr3:140866800-140869400	Weak transcription	Brain Germinal Matrix	brain
15	chr3:140866800-140876600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:140867000-140869400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:140867000-140871400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:140867000-140871400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr3:140867200-140868800	Enhancers	HepG2	liver
20	chr3:140867200-140872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:140867200-140872000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr3:140867200-140872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:140867400-140869000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:140867400-140873000	Enhancers	Fetal Heart	heart
25	chr3:140867800-140868600	Enhancers	Spleen	Spleen
26	chr3:140868000-140868600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr3:140868000-140869400	Weak transcription	Fetal Stomach	stomach

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