Variant report

Variant	rs556124617
Chromosome Location	chr7:66494986-66494987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1032575	chr7:66432853-66576034	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv981515	chr7:66477535-66532313	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv824151	chr7:66494072-66508524	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv33653	chr7:66494301-66508342	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66462400-66496000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:66462400-66500200	Weak transcription	Psoas Muscle	Psoas
3	chr7:66462400-66508000	Weak transcription	Stomach Mucosa	stomach
4	chr7:66462600-66497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:66463000-66507800	Weak transcription	Fetal Brain Male	brain
6	chr7:66463200-66510000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:66470400-66495200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr7:66476800-66496800	Weak transcription	NHLF	lung
9	chr7:66477000-66495000	Weak transcription	Right Ventricle	heart
10	chr7:66477000-66499000	Weak transcription	Colonic Mucosa	Colon
11	chr7:66483400-66495000	Weak transcription	Brain Germinal Matrix	brain
12	chr7:66483400-66502000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:66483400-66551200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:66483600-66534400	Weak transcription	Aorta	Aorta
15	chr7:66485800-66501000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:66486400-66531600	Weak transcription	Ovary	ovary
17	chr7:66486600-66507600	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:66487000-66515800	Weak transcription	Fetal Brain Female	brain
19	chr7:66487000-66576600	Weak transcription	Gastric	stomach
20	chr7:66487800-66508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:66488000-66495000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:66488000-66497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr7:66488000-66500200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr7:66488000-66501000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:66488000-66501000	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:66488000-66501400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:66488000-66501400	Weak transcription	Hela-S3	cervix
28	chr7:66488000-66502000	Weak transcription	Brain Angular Gyrus	brain
29	chr7:66488000-66508600	Weak transcription	Fetal Lung	lung
30	chr7:66488000-66511800	Weak transcription	HepG2	liver
31	chr7:66488400-66501000	Weak transcription	Brain Anterior Caudate	brain
32	chr7:66488400-66501800	Weak transcription	Fetal Heart	heart
33	chr7:66488800-66500200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:66489200-66498000	Weak transcription	Placenta	Placenta
35	chr7:66490200-66495400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:66490400-66495000	Weak transcription	A549	lung
37	chr7:66490800-66496000	Weak transcription	HUVEC	blood vessel
38	chr7:66490800-66505600	Weak transcription	Small Intestine	intestine
39	chr7:66491000-66501400	Weak transcription	HSMM	muscle
40	chr7:66491000-66507600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:66491200-66495000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr7:66491200-66500800	Weak transcription	HSMMtube	muscle
43	chr7:66491200-66506000	Weak transcription	Osteobl	bone
44	chr7:66491400-66495000	Weak transcription	NH-A	brain
45	chr7:66493600-66495000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:66493600-66506000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:66494200-66495600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:66494400-66495000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
49	chr7:66494400-66495200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:66494400-66495400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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