Variant report

Variant	rs556138828
Chromosome Location	chr7:62941088-62941089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF680-37	chr7:62940976-62941367	NONHSAT120919

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026246	chr7:61987161-62984310	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv533415	chr7:62030665-62985503	ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv888219	chr7:62353275-62944123	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	esv3478284	chr7:62531504-63351786	ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
5	esv3478287	chr7:62531504-63351786	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1020393	chr7:62619341-62984310	ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1023293	chr7:62619341-63109895	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
8	nsv1016602	chr7:62623431-63339807	ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
9	nsv888230	chr7:62705018-63294907	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
10	nsv888233	chr7:62761336-62955063	ZNF genes & repeats	TF binding region CpG island lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv888235	chr7:62803799-62944123	ZNF genes & repeats	TF binding region CpG island lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv966813	chr7:62843152-62983788	ZNF genes & repeats	TF binding region CpG island lncRNA	13 gene(s)	inside rSNPs	diseases
13	nsv888242	chr7:62862076-62944123	ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv888243	chr7:62862076-62979947	ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv888244	chr7:62862076-62979947	ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv888245	chr7:62892076-63002115	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
17	nsv888246	chr7:62892076-63008609	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
18	nsv888247	chr7:62910947-63008609	ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	n/a
19	nsv888248	chr7:62910947-63020800	ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	n/a
20	nsv888249	chr7:62910947-63109270	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
21	esv1791772	chr7:62914253-62956735	ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a
22	nsv1032341	chr7:62925821-63112016	Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
23	nsv427784	chr7:62930318-63135087	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1023394	chr7:62933472-63147404	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
25	nsv888250	chr7:62935337-63131060	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
26	nsv888251	chr7:62939356-63078112	ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
27	nsv888252	chr7:62939356-63131060	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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