Variant report

Variant	rs556163029
Chromosome Location	chr13:38925880-38925881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:38917886..38920151-chr13:38925868..38928712,2	K562	blood:
2	chr13:38922765..38925249-chr13:38925440..38927480,2	K562	blood:
3	chr13:38924316..38926531-chr13:38938318..38940718,2	MCF-7	breast:
4	chr13:38915558..38922004-chr13:38925835..38933064,8	K562	blood:

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv976234	chr13:38924727-38933604	Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38922600-38926000	Active TSS	Right Atrium	heart
2	chr13:38922800-38926200	Active TSS	Right Ventricle	heart
3	chr13:38923000-38926000	Active TSS	Psoas Muscle	Psoas
4	chr13:38924400-38938800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:38924600-38926000	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr13:38924600-38926000	Flanking Active TSS	Colon Smooth Muscle	Colon
7	chr13:38924600-38926000	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr13:38924600-38926000	Flanking Active TSS	Fetal Brain Female	brain
9	chr13:38924600-38926200	Flanking Active TSS	Brain Substantia Nigra	brain
10	chr13:38924800-38926000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr13:38924800-38936400	Weak transcription	Esophagus	oesophagus
12	chr13:38924800-38937000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:38924800-38937200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:38924800-38937400	Weak transcription	Gastric	stomach
15	chr13:38924800-38939000	Weak transcription	Lung	lung
16	chr13:38924800-38939400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:38925000-38926000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:38925000-38926000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr13:38925000-38926000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr13:38925000-38926000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr13:38925000-38926000	Transcr. at gene 5' and 3'	Osteobl	bone
22	chr13:38925000-38926200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:38925000-38926200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr13:38925000-38926200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr13:38925000-38926200	Transcr. at gene 5' and 3'	NH-A	brain
26	chr13:38925000-38936800	Weak transcription	Aorta	Aorta
27	chr13:38925000-38937400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr13:38925200-38926000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
32	chr13:38925200-38926000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr13:38925200-38926000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:38925200-38926000	Enhancers	Liver	Liver
35	chr13:38925200-38926000	Enhancers	Brain Angular Gyrus	brain
36	chr13:38925200-38926000	Enhancers	Brain Cingulate Gyrus	brain
37	chr13:38925200-38926000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:38925200-38926000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr13:38925200-38926000	Enhancers	Fetal Heart	heart
40	chr13:38925200-38926000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr13:38925200-38926000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
42	chr13:38925200-38926000	Transcr. at gene 5' and 3'	NHEK	skin
43	chr13:38925200-38926200	Enhancers	Primary T cells from cord blood	blood
44	chr13:38925200-38926200	Genic enhancers	Fetal Lung	lung
45	chr13:38925200-38926200	Enhancers	Rectal Smooth Muscle	rectum
46	chr13:38925200-38926200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr13:38925200-38926200	Genic enhancers	HSMM	muscle
48	chr13:38925200-38928400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:38925200-38928800	Weak transcription	Fetal Muscle Trunk	muscle
50	chr13:38925200-38929000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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